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. 2014 May 23;9(5):e96186. doi: 10.1371/journal.pone.0096186

Table 5. Genome-wise and suggestive significant SNPs for indices of fatty acid traits.

Trait Rankb SNP Chr. Position(bp) Nearest Gene/Candidate Gene Distance(bp) Raw P_valuea P_value Bonferroni
C14index 26 ARS-BFGL-NGS-15914 0 0 NA NA 2.59E-09 1.05E-04
C14index 38 UA-IFASA-5862 0 0 NA NA 8.04E-08 3.26E-03
C18index 65 BTB-00270136 0 0 NA NA 1.19E-05 0.482
C18index 91 Hapmap60647-rs29027341 0 0 NA NA 2.25E-05 0.912
C18index 23 BTA-111771-no-rs 1 37174447 EPHA3 50365 2.86E-06 0.116
C18index 22 ARS-BFGL-NGS-106725 1 41577955 EPHA6 Within 2.74E-06 0.111
C18index 45 ARS-BFGL-NGS-115763 1 66139653 GTF2E1 67771 6.14E-06 0.249
C18index 35 BTB-00032200 1 67764428 DIRC2 Within 3.83E-06 0.156
C18index 33 ARS-BFGL-NGS-35839 1 102589009 BCHE 178966 3.69E-06 0.150
C18index 24 ARS-BFGL-NGS-111111 1 146302724 HSF2BP/ AGPAT3 43214/402889 2.92E-06 0.118
C18index 12 ARS-BFGL-NGS-109493 1 146354654 HSF2BP/ AGPAT3 Within/350959 1.13E-06 4.59E-02
C18index 13 BTA-56389-no-rs 1 146384457 HSF2BP/ AGPAT3 Within/321156 1.13E-06 4.59E-02
C18index 32 ARS-BFGL-NGS-76347 1 146704618 AGPAT3 995 3.66E-06 0.149
C18index 84 Hapmap59917-rs29012418 2 24519348 METAP1D Within 1.90E-05 0.771
C18index 21 Hapmap53388-rs29010903 2 63581955 MGAT5 129790 2.65E-06 0.107
C18index 3 ARS-BFGL-NGS-33744 2 79388083 GYPC/ STAT1 83687/506149 8.95E-08 3.63E-03
C18index 31 Hapmap53419-rs29015159 2 88205436 SATB2 43199 3.57E-06 0.145
C18index 5 Hapmap33966-BES2_Contig368_774 2 88545567 SATB2 90018 2.56E-07 1.04E-02
C18index 50 ARS-BFGL-NGS-23872 2 95199905 ADAM23 Within 7.34E-06 0.298
C18index 76 ARS-BFGL-NGS-98354 2 95512347 FASTKD2 Within 1.47E-05 0.598
C18index 55 ARS-BFGL-NGS-99030 2 98160191 UNC80 Within 8.85E-06 0.359
C18index 15 ARS-BFGL-NGS-45691 2 128484790 RUNX3/ FABP3 144886/5700960 1.41E-06 0.057
C18index 9 ARS-BFGL-NGS-118924 2 128529102 RUNX3/ FABP3 100574/5745272 6.04E-07 2.45E-02
C18index 28 Hapmap30257-BTA-142970 5 25358659 USP44 44459 3.24E-06 0.131
C18index 75 ARS-BFGL-NGS-38038 5 27992179 NR4A1 Within 1.45E-05 0.588
C18index 59 Hapmap41951-BTA-73168 5 28442563 SLC4A8 25682 9.43E-06 0.383
C18index 16 ARS-BFGL-NGS-8796 5 29095603 LOC510716 Within 1.82E-06 0.074
C18index 92 ARS-BFGL-NGS-53488 5 41154328 PRICKLE1 166915 2.35E-05 0.953
C18index 47 ARS-BFGL-NGS-116897 5 95743746 PLBD1/ OLR1 Within/4500525 6.49E-06 0.264
C18index 73 BTB-01685239 6 12282881 UGT8 81408 1.44E-05 0.586
C18index 14 BTB-00246150 6 20993424 PPA2 Within 1.15E-06 4.68E-02
C18index 30 Hapmap26001-BTC-038813 6 44926243 PPARGC1A Within 3.54E-06 0.144
C18index 62 Hapmap31284-BTC-039204 6 45096462 PPARGC1A 135929 1.09E-05 0.443
C18index 87 Hapmap49746-BTA-76106 6 46140090 LGI2/ PPARGC1A Within/82649 1.97E-05 0.801
C14index 52 ARS-BFGL-NGS-106015 6 61199572 RBM47 Within 2.03E-06 0.082
C14index 54 ARS-BFGL-NGS-80548 7 6434821 C7H19orf44 Within 2.79E-06 0.113
C14index 42 ARS-BFGL-NGS-110361 7 15782979 COL5A3 Within 5.50E-07 2.23E-02
C14index 78 ARS-BFGL-NGS-104050 7 62839580 CSNK1A1 13832 1.70E-05 0.691
C18index 77 BTB-00316650 7 65098028 GLRA1 Within 1.67E-05 0.679
C18index 63 BTB-01687547 8 20989026 LOC101905651 328218 1.13E-05 0.458
C18index 48 ARS-BFGL-NGS-9052 8 78009328 FRMD3 181107 6.84E-06 0.278
C18index 90 ARS-BFGL-NGS-106379 8 113159018 TSSC1 90395 2.24E-05 0.909
C18index 52 ARS-BFGL-NGS-15823 9 28887462 PKIB Within 8.15E-06 0.331
C18index 10 BTB-01332998 10 73466092 SLC38A6 15901 6.76E-07 2.74E-02
C18index 29 ARS-BFGL-NGS-4783 10 73487550 SLC38A6 37359 3.30E-06 0.134
C18index 78 ARS-BFGL-NGS-22113 10 73551579 TMEM30B 94651 1.68E-05 0.683
C18index 26 BTB-00471219 11 32709462 NRXN1 Within 3.14E-06 0.128
C18index 44 Hapmap25798-BTA-126388 11 32731961 NRXN1 Within 6.07E-06 0.247
C18index 6 Hapmap40257-BTA-91916 11 32789048 NRXN1 Within 3.25E-07 1.32E-02
C18index 93 ARS-BFGL-NGS-85007 11 53430229 CTNNA2 1292050 2.37E-05 0.964
C18index 72 BTB-01079278 11 57078447 REG3A 436061 1.39E-05 0.563
C18index 60 BTB-01079350 11 57107070 REG3A 464684 9.51E-06 0.386
C18index 1 Hapmap51531-BTA-98947 11 57522675 REG3A 880289 2.08E-08 8.44E-04
C18index 2 BTB-01328920 11 57639084 LRRTM4 792049 4.34E-08 1.76E-03
C18index 54 ARS-BFGL-NGS-114087 11 64057850 SPRED2 293893 8.21E-06 0.333
C18index 25 ARS-BFGL-NGS-43985 11 64184454 SPRED2 420497 3.00E-06 0.122
C18index 40 ARS-BFGL-NGS-91014 11 65493222 C11H2orf66 Within 4.88E-06 0.198
C16index 8 ARS-BFGL-NGS-110868 11 75329413 KLHL29 Within 1.65E-05 0.670
C18index 89 UA-IFASA-2295 11 97754180 RALGPS1 Within 2.16E-05 0.878
C18index 27 BTA-119672-no-rs 11 102911946 AK8 Within 3.21E-06 0.130
C18index 71 BTB-00490466 12 47836570 DIS3 Within 1.37E-05 0.557
C14index 81 Hapmap42477-BTA-22799 12 48645720 KLF12 181742 2.25E-05 0.914
C18index 83 Hapmap57649-rs29022414 12 66068259 GPC5 223887 1.85E-05 0.753
C16index 2 Hapmap38187-BTA-105082 12 69216840 DCT 286101 7.38E-06 0.300
C18index 4 ARS-BFGL-BAC-13788 12 69512332 DCT Within 1.79E-07 7.27E-03
C18index 46 ARS-BFGL-NGS-45730 12 70260457 ABCC4 49496 6.28E-06 0.255
C14index 55 ARS-BFGL-NGS-13252 12 81184160 GGACT 25567 3.04E-06 0.123
C16index 6 Hapmap53988-rs29024591 13 65855988 EPB41L1/ ACSS2 23900/1014468 1.19E-05 0.482
C16index 9 Hapmap40712-BTA-33406 13 67101174 BLCAP/ ACSS2 13538/2259654 1.74E-05 0.705
C18index 61 ARS-BFGL-NGS-40278 13 67122063 BLCAP/ ACSS2 Within/2280543 9.81E-06 0.398
C16index 3 BPI-2 13 67833153 LOC514211/ ACSS2 Within/2991633 7.51E-06 0.305
C16index 10 ARS-BFGL-NGS-107113 13 67958189 LOC514978/ ACSS2 Within/3116669 1.83E-05 0.743
C16index 1 Hapmap55254-rs29014939 13 69042143 DHX35 573959 5.20E-06 0.211
C18index 41 Hapmap30381-BTC-005750 14 1463676 C14H8orf33/ DGAT1 23690/331749 5.62E-06 0.228
C14index 73 ARS-BFGL-NGS-57820 14 1651311 LOC100294916/ DGAT1 Within/144114 1.03E-05 0.419
C14index 75 ARS-BFGL-NGS-4939 14 1801116 DGAT1 Within 1.15E-05 0.469
C18index 88 ARS-BFGL-NGS-4939 14 1801116 DGAT1 Within 2.00E-05 0.812
C14index 47 Hapmap52798-ss46526455 14 1923292 MAF1/ DGAT1 Within/118454 1.08E-06 4.39E-02
C14index 80 Hapmap30986-BTC-056068 14 10346734 EFR3A 64293 1.97E-05 0.799
C18index 51 BTB-00557532 14 24643266 XKR4 28554 7.35E-06 0.299
C18index 82 ARS-BFGL-BAC-10245 14 31819743 PDE7A Within 1.80E-05 0.731
C18index 34 ARS-BFGL-NGS-2025 14 65452336 ZNF706 103905 3.79E-06 0.154
C18index 8 Hapmap35102-BES3_Contig324_378 14 66523007 RGS22 Within 5.63E-07 2.29E-02
C18index 58 UA-IFASA-4785 14 71096693 C14H8orf37 300038 9.36E-06 0.380
C18index 79 BTB-01296218 15 17344116 ALKBH8 21050 1.77E-05 0.720
C18index 39 ARS-BFGL-NGS-35704 15 18335423 C15H11orf65 Within 4.83E-06 0.196
C18index 37 ARS-BFGL-NGS-12066 15 27291268 BUD13 542743 4.33E-06 0.176
C18index 43 BTA-36518-no-rs 15 32983903 SORL1 228564 6.04E-06 0.245
C18index 81 Hapmap56991-rs29010083 15 81595546 LOC538839 52784 1.78E-05 0.724
C18index 68 Hapmap46697-BTA-38171 16 2899256 NUAK2 Within 1.24E-05 0.501
C18index 7 ARS-BFGL-NGS-68533 16 60615012 LOC101902340 35998 5.39E-07 2.19E-02
C16index 7 BTB-01090859 16 63248646 XPR1 51157 1.51E-05 0.615
C18index 64 ARS-BFGL-NGS-36880 16 73736551 SLC30A1 28425 1.14E-05 0.465
C14index 83 ARS-BFGL-NGS-38696 17 18398611 MGST2 29230 2.29E-05 0.929
C14index 64 ARS-BFGL-NGS-66923 17 18910914 CCRN4L Within 5.55E-06 0.225
C14index 50 ARS-BFGL-NGS-102933 17 19315294 CCRN4L 404368 1.81E-06 0.074
C14index 39 BTA-91575-no-rs 17 20099837 SLC7A11 291555 2.96E-07 1.20E-02
C14index 79 Hapmap51443-BTA-40619 17 20996847 PCDH18 380577 1.72E-05 0.698
C14index 53 BTB-01585209 17 44910178 ZNF605 53460 2.79E-06 0.113
C14index 35 ARS-BFGL-NGS-109854 17 44963124 ZNF605 514 6.46E-08 2.62E-03
C18index 19 ARS-BFGL-NGS-71116 17 68002540 MYO18B Within 2.41E-06 0.098
C18index 36 ARS-BFGL-NGS-37725 17 68490453 TPST2 Within 4.30E-06 0.175
C18index 74 BTB-01790846 20 13263157 SREK1 128568 1.44E-05 0.586
C18index 85 ARS-BFGL-BAC-2469 20 33433160 HEATR7B2/ OXCT1 22507/584434 1.93E-05 0.784
C18index 56 ARS-BFGL-NGS-76756 20 33491273 HEATR7B2/ OXCT1 Within/642547 9.20E-06 0.373
C18index 49 BTB-01423653 20 38578200 SPEF2/ PRLR Within/495046 6.96E-06 0.282
C18index 42 BTB-01423676 20 38606353 SPEF2/ PRLR Within/466893 6.02E-06 0.244
C18index 20 Hapmap30570-BTA-152778 20 38761711 SPEF2/ PRLR 154961/311535 2.55E-06 0.104
C18index 80 ARS-BFGL-NGS-99716 21 63560239 VRK1 216337 1.78E-05 0.723
C18index 53 ARS-BFGL-NGS-39459 22 50474049 CACNA2D2 Within 8.15E-06 0.331
C18index 69 Hapmap54558-rs29009598 24 29187804 CDH2 Within 1.27E-05 0.517
C16index 4 ARS-BFGL-NGS-45679 24 42582505 APCDD1 Within 7.82E-06 0.318
C16index 5 Hapmap31260-BTC-015327 25 2224930 ZG16B Within 8.51E-06 0.346
C14index 51 Hapmap54064-rs29011996 26 5526925 PCDH15 Within 2.02E-06 0.082
C14index 77 BTB-01077939 26 7685110 PRKG1 Within 1.35E-05 0.548
C14index 27 ARS-BFGL-NGS-13746 26 9866940 RNLS 65137 3.71E-09 1.51E-04
C14index 72 Hapmap58185-rs29022254 26 10002077 RNLS Within 1.02E-05 0.415
C14index 36 BTA-61921-no-rs 26 10255258 LIPJ 7406 6.99E-08 2.84E-03
C14index 20 ARS-BFGL-NGS-21794 26 10397362 LOC100336557/ LIPK 16309/35288 4.20E-10 1.70E-05
C14index 68 Hapmap59335-rs29016866 26 10689379 ACTA2 9731 8.36E-06 0.339
C14index 76 BTA-111857-no-rs 26 10815586 FAS 67560 1.17E-05 0.476
C14index 56 BTB-00924013 26 10922061 CH25H 54132 3.05E-06 0.124
C14index 48 BTA-08775-rs29022332 26 11201198 SLC16A12 39720 1.09E-06 4.42E-02
C14index 57 ARS-BFGL-NGS-53115 26 11528933 KIF20B 61222 3.10E-06 0.126
C14index 25 ARS-BFGL-NGS-63853 26 11942868 MIR2895 67662 2.50E-09 1.01E-04
C14index 61 ARS-BFGL-NGS-12381 26 12200948 LOC100141242 24477 4.76E-06 0.193
C14index 17 BTB-01908417 26 12268427 LOC784522 15486 1.71E-10 6.94E-06
C14index 67 BTB-01841682 26 12295284 LOC784522 42343 8.27E-06 0.336
C14index 84 ARS-BFGL-NGS-41148 26 12364119 HTR7 10881 2.32E-05 0.942
C14index 23 Hapmap52817-rs29011969 26 14155229 HHEX 29160 1.34E-09 5.45E-05
C14index 69 ARS-BFGL-NGS-85864 26 14532797 CYP26A1 69001 8.38E-06 0.340
C14index 74 ARS-BFGL-NGS-110475 26 15604631 PLCE1 Within 1.04E-05 0.421
C14index 58 BTB-00706838 26 15824141 TBC1D12 Within 3.31E-06 0.134
C14index 70 BTB-00927439 26 16315378 CYP2C19 20815 9.08E-06 0.369
C14index 18 ARS-BFGL-NGS-29299 26 16614068 PDLIM1/ SORBS1 Within/73061 2.06E-10 8.36E-06
C14index 49 Hapmap41595-BTA-60800 26 16791783 SORBS1 Within 1.09E-06 4.43E-02
C14index 28 Hapmap58930-rs29010490 26 16822073 SORBS1 Within 5.90E-09 2.40E-04
C14index 59 ARS-BFGL-NGS-106959 26 17225652 CC2D2B Within 3.80E-06 0.154
C14index 63 ARS-BFGL-NGS-113660 26 17246984 CC2D2B Within 5.20E-06 0.211
C14index 71 ARS-BFGL-NGS-25217 26 17307507 CCNJ 13017 9.96E-06 0.404
C14index 66 ARS-BFGL-NGS-114539 26 18808408 SFRP5 21032 7.36E-06 0.299
C14index 82 ARS-BFGL-NGS-97471 26 18882047 CRTAC1 109 2.27E-05 0.921
C14index 34 ARS-BFGL-NGS-41056 26 18906121 CRTAC1 Within 4.78E-08 1.94E-03
C14index 41 ARS-BFGL-NGS-116902 26 18967997 CRTAC1 Within 4.05E-07 1.64E-02
C14index 43 ARS-BFGL-NGS-25126 26 18994785 CRTAC1 Within 5.96E-07 2.42E-02
C14index 62 ARS-BFGL-NGS-71584 26 20290497 GOT1/ SCD1 Within/842247 5.11E-06 0.207
C14index 14 ARS-BFGL-NGS-23064 26 20365711 NKX2-3/ SCD1 34516/767033 2.95E-11 1.20E-06
C14index 15 ARS-BFGL-NGS-77668 26 20393457 NKX2-3/ SCD1 6770/744488 6.02E-11 2.44E-06
C14index 33 ARS-BFGL-NGS-2464 26 20444634 SLC25A28/ SCD1 21194/688110 3.96E-08 1.61E-03
C14index 19 BTB-00930925 26 20474308 SLC25A28/ SCD1 Within/658436 2.61E-10 1.06E-05
C14index 24 ARS-BFGL-NGS-39397 26 20716721 DNMBP/ SCD1 Within/416023 1.54E-09 6.25E-05
C14index 22 BTB-00930720 26 20903573 LOC511498/ SCD1 Within/244744 6.89E-10 2.80E-05
C14index 31 Hapmap46411-BTA-15820 26 20984335 CHUK / SCD1 Within/148409 1.10E-08 4.45E-04
C14index 16 Hapmap31825-BTA-158647 26 21056547 PKD2L1/ SCD1 Within/76197 1.56E-10 6.35E-06
C14index 10 Hapmap33073-BTA-162864 26 21180893 SCD1 32576 3.04E-12 1.23E-07
C14index 1 BTB-00931481 26 21226405 WNT8B/ SCD1 14100/78088 6.91E-17 2.80E-12
C14index 13 ARS-BFGL-NGS-110077 26 21322557 HIF1AN/ SCD1 22399/174240 2.04E-11 8.28E-07
C14index 11 ARS-BFGL-NGS-108305 26 21363670 SCD1 /HIFIAN 63512/215353 6.46E-12 2.62E-07
C14index 5 BTB-00931586 26 21409429 PAX2/ SCD1 61334/261112 3.39E-13 1.38E-08
C14index 4 ARS-BFGL-NGS-114149 26 21702714 LZTS2/ SCD1 656/564769 3.10E-13 1.26E-08
C14index 9 ARS-BFGL-NGS-116481 26 21977581 LOC100847491/ SCD1 10062/829264 1.20E-12 4.87E-08
C14index 7 Hapmap24832-BTA-138805 26 22016380 BTRC/ SCD1 Within/868063 6.31E-13 2.56E-08
C14index 6 ARS-BFGL-NGS-6259 26 22059103 BTRC/ SCD1 Within/910786 5.97E-13 2.42E-08
C14index 8 BTB-00932332 26 22118554 BTRC/ SCD1 Within/970237 7.55E-13 3.06E-08
C14index 2 ARS-BFGL-NGS-107403 26 22889812 NFKB2 1586 2.62E-15 1.06E-10
C14index 21 Hapmap48222-BTA-122240 26 23641881 C26H10orf26 Within 5.68E-10 2.31E-05
C14index 30 Hapmap49372-BTA-91009 26 23689229 C26H10orf26 3017 6.47E-09 2.63E-04
C14index 32 BTA-60918-no-rs 26 23853334 CNNM2 Within 3.34E-08 1.36E-03
C14index 12 BTA-60935-no-rs 26 23876476 CNNM2 Within 1.98E-11 8.03E-07
C14index 40 ARS-BFGL-NGS-2180 26 24477962 SH3PXD2A Within 3.20E-07 1.30E-02
C14index 29 ARS-BFGL-NGS-1092 26 24531763 SH3PXD2A Within 6.21E-09 2.52E-04
C14index 65 ARS-BFGL-NGS-18194 26 24575207 SH3PXD2A Within 5.58E-06 0.227
C14index 3 ARS-BFGL-NGS-118189 26 24786731 SLK Within 6.55E-14 2.66E-09
C14index 46 UA-IFASA-4715 26 25314352 CCDC147 27285 9.22E-07 3.74E-02
C14index 44 BTB-00935537 26 26585557 SORCS3/ ECHS1 187266/719949 7.48E-07 3.04E-02
C14index 37 Hapmap28763-BTA-162328 26 26757136 SORCS3/ ECHS1 358845/891528 7.79E-08 3.16E-03
C14index 60 BTA-87355-no-rs 26 27251857 SORCS1 558341 4.71E-06 0.191
C14index 45 ARS-BFGL-NGS-1448 27 37357125 HOOK3/ AGPAT6 Within/1128138 7.66E-07 3.11E-02
C18index 11 ARS-BFGL-NGS-110992 28 20421361 REEP3 614577 9.76E-07 3.96E-02
C18index 18 ARS-BFGL-NGS-4865 28 28011033 CDH23 Within 2.38E-06 0.097
C18index 86 ARS-BFGL-NGS-12970 29 40646639 PPP1R32/ FADS1 2220/292226 1.94E-05 0.788
C18index 57 ARS-BFGL-NGS-11681 X 3622615 SLC25A43 24203 9.32E-06 0.378
C18index 67 Hapmap48540-BTA-97806 X 8700029 ODZ1 Within 1.23E-05 0.498
C18index 70 Hapmap50046-BTA-58882 X 82022276 MIR374B 1635 1.33E-05 0.540
C18index 17 Hapmap60551-rs29017241 X 82281306 XIST Within 2.17E-06 0.088
C18index 38 Hapmap60664-rs29017374 X 107043386 CASK 113889 4.61E-06 0.187
C18index 66 Hapmap49563-BTA-30596 X 120716539 IL1RAPL1 Within 1.21E-05 0.490

Note: see note to Table 2.