Table 11.

Relative abundances of annotated subsystems within the annotated functional system of Virulence, disease, and defense.

	t0 control	t0 inoculated	t1 control	t1 inoculated	t2 control	t2 inoculated
Resistance to antibiotics and toxic compounds	80.7	81.4	78.9	78.8	79.7	79.8
–	9.7	9.1	10.3	10.2	10.4	10.2
Multi locus sequence typing	7.2	7.2	8.2	8.4	7.5	7.4
Adhesion	1.4	1.4	1.5	1.5	1.5	1.5
Bacteriocins, ribosomally synthesized antibacterial peptides	0.4	0.5	0.6	0.5	0.4	0.6
Invasion and intracellular resistance	0.4	0.3	0.3	0.3	0.3	0.3
Toxins and superantigens	0.1	0.1	0.2	0.2	0.2	0.1