Table 3. Summary of the mapped reads and SNPs produced after the homoeologus reads separation.

It is based in the selective mapping with its progenitors.

Species	Accession	Progenitor I	Mapped to progenitor I (%)	SNPs for I*	Progenitor II	Mapped to progenitor II (%)	SNPs for II*
Glycine dolichocarpa	1134	D3	11.4	399,884 [2.2]	D4	11.6	380,389 [2.1]
	1188	D3	20.8	227,610 [2.0]	D4	20.4	220,610 [2.1]
	1286	D3	20.3	124,984 [1.7]	D4	20.3	123,873 [1.8]
	1393	D3	19.6	197,132 [1.9]	D4	19.8	192,148 [1.9]
	1854	D3	17.9	245354 [1.5]	D4	19.3	242,561 [1.7]
Glycine tomentella T1	1288	D1	14.9	143,232[1.7]	D3	17.5	160,873 [1.9]
	1361	D1	15.0	155,360 [1.6]	D3	17.6	175,871 [2.0]
	1763	D1	14.8	158,777 [1.8]	D3	17.3	179,032 [2.0]
Glycine tomentella T5	A58_1	A	16.9	190,138[2.1]	D1	20.5	222,134 [1.8]
	1487	A	17.1	174,051 [1.9]	D1	20.0	202,555 [1.7]
	1969	A	16.0	182,615 [2.4]	D1	18.6	214,799 [1.8]

Notes.

^*Square brackets, percentage of heterozygous positions.