Table 5. Summary of the genes used in the BEAST and *BEAST analysis.

Tree likelihood values and the functional annotation are shown.

GeneID	TreeLikelihood mean	TreeLikelihood ESS	Gene functional annotation
Glyma01g35620	−4,676.067	1,361.926	Phytoene dehydrogenase
Glyma02g11580	−3,986.812	1,034.414	RNA binding protein
Glyma03g29330	−7,611.686	894.813	Magnesium chelatase
Glyma03g36630	−2,666.725	696.197	Rho GTPase activating protein
Glyma04g39670	−4,142.157	2,556.251	ATP-binding transport protein-related
Glyma05g05750	−3,028.809	541.483	Beta-amylase
Glyma05g09310	−2,578.198	305.191	Pyruvate kinase
Glyma05g26230	−3,741.498	5,156.337	Metalloprotease M41 FtsH
Glyma05g37840	−2,138.404	3,766.767	Haloacid dehalogenase-like hydrolase
Glyma06g18640	−3,418.91	6,613.752	Elongation factor Tu
Glyma07g03370	−2,091.845	742.796	Palmytoil-monogalactosyldiacylglycerol delta-7 desaturase
Glyma07g17180	−2,218.934	2,833.162	Fructose-1,6-bisphosphatase
Glyma10g42100	−2,903.849	1,774.192	3-ketoacyl-CoA synthase
Glyma11g13880	−4,644.419	7,487.252	Lipoxygenase
Glyma11g33720	−3,592.689	2,273.389	DELLA protein
Glyma12g04150	−2,061.527	4,777.335	Fructose-bisphosphate aldolase
Glyma12g12230	−2,177.72	1,790.185	O-methyltransferase
Glyma13g17820	−2,439.715	342.999	Polyubiquitin
Glyma14g03500	−2,063.541	819.216	Phytoene synthase
Glyma16g00410	−4,041.294	4,475.536	heat shock protein 70
Glyma16g01980	−4,985.489	387.993	Myb-like protein
Glyma16g04940	−2,152.355	4,586.42	Glyceraldehyde 3-phosphate dehydrogenase
Glyma18g04080	−2,285.776	9,535.754	26S proteasome regulatory complex, ATPase RPT4
Glyma19g03390	−2,344.831	3,190.5	Unknown
Glyma19g32940	−2,176.029	2,579.558	Fatty acid desaturase
Glyma20g24930	−2,803.585	6,535.602	3-ketoacyl-CoA synthase
Glyma20g32930	−2,867.321	2,078.549	Cytochrome P450 77A3