Table 1.
Summary of Roche 454 GS-FLX assembly of S. lycopersicoides transcriptome sequences
| Metric | Sequence (n) | Bases (bp) |
|---|---|---|
| Total reads | 654,159 | 164,925,531 |
| Average read length | 252 | |
| Aligned reads | 554,524 (84.77%) | 140,923,440 (85.45%) |
| Average trimmed read length | 254 | |
| All contigs | 13,008 | 9,327,270 |
| Average contig length | 717 | |
| Large contigs | 8,431 | 7,863,766 |
| Average large contig length | 932 | |
| N50 large contig length | 988 | |
| Largest contig | 4,469 | |
| Isotigs | 11,916 | 1,0722,599 |
| Average isotig length | 899 | |
| N50 isotig length | 1,041 | |
| Largest isotig | 4,504 |