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. 2011 Dec 6;27(2):127–135. doi: 10.1264/jsme2.ME11283

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Copyright © 2012 by the Japanese Society of Microbial Ecology / the Japanese Society of Soil Microbiology

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3 — Neighbor-joining distance matrix tree of AhDOa proteins of the AHD isolates and related Rieske-type dioxygenases based on deduced amino acid sequences (scale = 10% sequence dissimilarity). The sequence of Pseudomonas resinovorans CA10 CarA is used as an outgroup to root the tree. The DDBJ/EMBL/GenBank accession numbers for the sequences are shown behind organism names. The sequences determined in this study are shown in bold. Branching points supported by >800 bootstrap values with 1,000 resamplings are shown by closed circles. Clusters I, II, and III show the Toluene/Benzoate, Biphenyl, and Naphthalene dioxygenase families, respectively, based on the Batie classification system (3, 42, 46).