Table 1.
Location and Confirmation Status of 21 HSA19q13.2 and 10 Mmu7 ZNF Genes
| Gene name | Accession nos. of best available GenBank sequence(s) | Statusa | Accession no. of genomic sequences | Position and orientationb of ZNF-encoding exon |
|---|---|---|---|---|
| Human genes (aliases) | ||||
| ZNF283 (LOC163140) | XM_092026, AY166784 | b | NT_011109.13 | 6506570-6508270 > |
| ZNF404 (LOC163141) | XM_092027, AY166785 | b | NT_011109.13 | 6532208-6533710 < |
| ZNF45 | NM_003425 | a | NT_011109.13 | 6573037-6574830 < |
| ZNF221 | NM_013359 | a | NT_011109.13 | 6625438-6626985 > |
| ZNF155 | NM_003445 | a | NT_011109.13 | 6655769-6657061 > |
| ZNF230 | NM_006300 | a | NT_011109.13 | 6669903-6671093 > |
| ZNF222 | NM_013360 | a | NT_011109.13 | 6691449-6692660 > |
| ZNF223 | NM_013361 | a | NT_011109.13 | 6725699-6726907 > |
| ZNF284 (LOC204823) | XM_115621, AY166789 | c | NT_011109.13 | 6745346-6745890 > |
| ZNF224 (ZNF255) | NM_013398 | a | NT_011109.13 | 6766031-6767914 > |
| ZNF225 | NM_013362 | a | NT_011109.13 | 6790485-6792323 > |
| ZNF234 | NM_006630 | a | NT_011109.13 | 6815887-6817749 > |
| ZNF226 | NM_016444 | a | NT_011109.13 | 6835133-6837304 > |
| ZNF227 | AK092253, AY166786 | d | NT_011109.13 | 6894342-6896465 > |
| ZNF233 (LOC147713) | XM_085852, AY166792 | c | NT_011109.13 | 6932543-6934285 > |
| ZNF235 (ZFP93) | NM_004234 | a | NT_011109.13 | 6946864-6948753 < |
| ZNF228 | NM_013380 | a | NT_011109.13 | 6987081-6989579 < |
| ZNF285 (FLJ30747) | NM_152354, AY166790 | d | NT_011109.13 | 7046134-7047759 < |
| ZNF229 | XM_091906, AY166791 | c | NT_011109.13 | 7087980-7090217 < |
| LOC147711 | XM_085851 | e | NT_011109.13 | 7131509-7132597 > |
| ZNF180 | NM_013256 | a | NT_011109.13 | 7136122-7137864 < |
| Mouse genes | ||||
| Zfp180 (LOC210135) | XM_145447, AY166794 | c | NT_039407.1 | 222414-224132 > |
| Zfp112 | NM_021307 | a | NT_039407.1 | 242855-245248 > |
| Zfp235 | NM_019941 | a | NT_039407.1 | 258613-260578 > |
| Zfp114 (LOC232966) | XM_149897, AY166793 | d | NT_039407.1 | 297974-299588 > |
| Zfp111 | NM_019940 | a | NT_039407.1 | 317807-319765 < |
| Zfp109 | NM_020262 | a | NT_039407.1 | 347853-349643 < |
| Zfp108 | NM_018791 | a | NT_039407.1 | 379937-381721 > |
| Zfp93 | NM_009567 | a | NT_039407.1 | 394544-396337 > |
| Zfp61 | NM_009561 | a | NT_039407.1 | 410897-412572c < |
| Zfp94 | NM_009568 | a | NT_039407.1 | 422628-423944 < |
Status codes: a, Complete coding sequence confirmed by RACE/RTPCR; b, Accuracy of NCBI gene model in given XM_sequence confirmed by sequence of KRAB + ZNF exon-spanning RT-PCR product; c, KRAB-ZNF exon boundary identified by sequence of exon-spanning RT-PCR product indicates that given XM_sequence/gene model requires modification; d, KRAB-ZNF exon co-expression confirmed and intron-exon boundary identified by sequence of RT-PCR product, no near-complete gene model available in GenBank; e, EST sequences matching KRAB and ZNF exons separately available in GenBank but we could not confirm co-transcription. Note that in some cases a more recent Genbank gene model is available, but is less complete than the gene model listed here. We have listed only accession numbers of sequences closest in gene structure to that predicted by our experiments. Where two accession numbers are listed in column 2 each sequence contains different and generally overlapping portions of the predicted gene structure.
< or > indicate forward or reverse orientation of coding sequence relative to sequenced genomic contig.
Assembly error in NT_039407.1 in ZNF-encoding exon of Zpf61; correct version in AC073693 as confirmed by cDNA sequence.