Table 2.
Accession | Sequence counta | High-quality bp | SNPs | InDels | SNPs/bpb | % divergence to Col-0c |
---|---|---|---|---|---|---|
C24 | 472 | 212,757 | 1,006 | 158 | 1:212 | 0.734 |
CS22491 | 452 | 213,646 | 988 | 171 | 1:216 | 0.749 |
Cvi-0 | 492 | 213,234 | 1,186 | 217 | 1:180 | 0.895 |
Ei-2 | 440 | 186,619 | 722 | 125 | 1:259 | 0.588 |
Gü-0 | 470 | 218,942 | 727 | 138 | 1:301 | 0.542 |
Ler | 486 | 216,760 | 1,057 | 184 | 1:206 | 0.751 |
Lz-0 | 462 | 211,138 | 925 | 157 | 1:228 | 0.660 |
Nd-1 | 473 | 214,844 | 829 | 157 | 1:259 | 0.641 |
Wei-0 | 465 | 214,110 | 860 | 147 | 1:250 | 0.602 |
Ws-0 | 299 | 133,947 | 568 | 115 | 1:236 | 0.684 |
Yo-0 | 444 | 200,321 | 751 | 138 | 1:267 | 0.635 |
Total | 4,995 | 2,236,318 | 3,773d | 619d | n.d.e | 0.680 |
Consensus sequences assembled from individual sequence reads (both directions from PCR fragments were sequenced).
SNPs from each accession in comparison to Col-0 are evaluated, which counts alleles identical in non-Col-0 accessions independently for each accession.
Average percent divergence calculated from pairwise alignment with the Col-0 genome sequence.
Due to redundancy of alleles, the overall number of SNPs and InDels is lower than the sum of SNPs from all accessions.
(n.d.) Not determined.