Table 1.
Characterization of Sequence Data Obtained from LPS-Stimulated Macrophage- and Dendritic Cell-Derived cDNA Libraries
| Clusters (#ESTs) | Singleton ESTs | |
|---|---|---|
| All reads | — | 64,552 |
| Unique sequences | 6352 (48,345) | 16,177 |
| Match “known” genea | 4284 (35,221) | — |
| No match to “known” genea | 2068 (13,124) | 16,177 |
| Match FANTOM2 | 1252 (6,202) | 2874 |
| No match to FANTOM2 | 816 (6,922) | 13,303 |
| Match TIGR MGI | 1583 (11,784) | 5585 |
| Novel unknown sequence | 485 (1,340) | 10,592 |
| —hitting the mouse genome | 206 (576) | 1891 |
| —hitting the human genome | 143 (375) | 2023 |
| —hitting both human & mouse | 50 (127) | 551 |
a
The known gene set comprised 48,137 nonredundant sequences from GenBank