Table 2.

Full-Length Tf Elements and Tf Fragments

Tf element	Accession #	Cosmid nomenclature	Cosmid coordinates	Chromosome (coordinates)	LTR length % ID	TSDs
Tf2-1	AL121764	SPAC9.04	11,035-15,950	1 (1,495,008-1,499,923)	349/99.7 (1 mismatch)	ATTTC
Tf2-2	AL035248	SPAC167.08	14,955-19,000/1-967	I (1,593,493-1,598,408) (complement)	349/99.4 (2 mismatches)	ATATT
Tf2-3	AL162531	SPAC2E1.03	3,666-8,581	I (2,956,482-2,961,397) (complement)	349/100	TGTTT
Tf2-4	Z69240	SPAC26A3.13	27,042-31,956	I (3,390,825-3,395,739) (complement)	349/100	CTTAA
Tf2-5	AL691401	SPAPB15E9.03	7,906-12,573/1-369	I (4,020,452-4,025,367) approximate based on relation to Tf2-6 which is also found in SPAPB15E9	349/100	GGAAT
Tf2-6	Z98978	SPAC27E2.08	21,407-26,322	I (4,046,405-4,051,320)	349/100	TTTTA
Tf2-7 Tandem with Tf2-8	AL590903	SPAPJ691/SPAC13D1.01	5,959-6,161/1-4,613	I (5,216,273-5,221,188)	349/100 outermost LTRs middle LTR is also 100% identical to the outer two	CTTAT outer two LTRs
Tf2-8 Tandem with Tf2-7	AL590903	SPAC13D1.02 SPAC19D5.09	4,614-5,586/1-5,233	I (5,220,840-5,225,755)	see above	see above
TF2-9	AL049769	SPBC9B6.02	1,990-6,903	II (1,732,948-1,737,861) (complement)	349/100	TTAAT
Tf2-10-pseudo	AL021746	SPBC1E8.04	8.941-13,855	II (1,885,474-1,890,388)	349/100	TATAA
Tf2-11	AL035675/AL021815	SPBC1289.17	31,633-36,498	II 4,334,796-4,339,308	298/349/91.963 recombinant 5′ LTR	n/a
Tf2-12	AL023518	SPCC1020.14	25,296-30,211	III 777,734-782,649	349/100	CTTAA
Tf2-13-pseudo	AL023776	SPCC1494.11	4,527-9,441	III 2,320,821-2,325,735 (complement)	349/100	TCAGG
Tf-fragment1	AL590602	SPAPB2C8	3,427-6,008	I (2,969,388-2,971,969) (complement)	349	n/a
Tf-fragment2	AL157811	SPAC186	18,480-18,712	I (5,568,771-5,569,003)	n/a	n/a
Tf-fragment3	AL391715	SPBC633	1,221-1,640	II (1,546,334-1,546,753)	n/a	n/a
Tf-fragment4	AL023595	SPCC794	15,423-17,305	III 254,424-256,306	n/a	n/a
Tf2-fragment5	AL023592	SPCC550	10,565-10,987	III 1,196,959-1,197,381	n/a	n/a

TSDs, target site duplications.