Table 2.
A List of FANTOM2 VPS ID of Proteins Within the Same Cluster as Proteins Identified to Contain CD
| No. | Locus | VPS ID | Database | Database ID | Reference |
|---|---|---|---|---|---|
| 1a | CHD-1 | PA1318.0 | SWISS-PROT | P40201 | Delmas et al. 1993 |
| 1c | PC1318.2 | FANTOM2 | 4930428D05 | ||
| 3a | CHD-3/4-Mi2a | PC71098.0 | FANTOM2 | B230201M16 | |
| 4a | CHD-3/4-Mi2b | PC50515.0 | FANTOM2 | 9430004K15 | |
| 6a | CHD-5a | PC14728.3 | FANTOM2 | B430211I15 | |
| 7a | CHD-5b | PC26677.0 | FANTOM2 | A330063D19 | |
| 7b | PC26677.1 | FANTOM2 | A530057H05 | ||
| 10a | Suv39h1 | PB5441.0 | GenPept | NP_035644 | Aagaard et al. 1999; Bultman and Magnuson 2000; Carninci et al. 2000; Czvitkovich et al. 2001 |
| PC5441.1 | FANTOM2 | E430014P09 | |||
| 11a | Suv39h2 | PB8025.0 | GenPept | NP_073561 | Carninci et al. 2000; Shibata et al. 2000 |
| PC8025.2 | FANTOM2 | D030020B18 | |||
| 11b | PC8025.1 | FANTOM2 | B130047D07 | ||
| 12 | HP1α | PB1167.0 | GenPept | NP_031652 | Le Douarin et al. 1996; Carninci et al. 2000; Shibata et al. 2000 |
| PC1167.1 | FANTOM2 | 6620401G22 | |||
| PC70076.0 | GenPept | AAF80993 | Li et al. 2001 | ||
| 13a | HP1β | PA1163.0 | SWISS-PROT | P23197 | Singh et al. 1991; Ball et al. 1997; Kawai et al. 2001 |
| 13b | PC1163.1 | FANTOM2 | 5730433G16 | ||
| 14 | HP1γ | PA1165.0 | SWISS-PROT | P23198 | Singh et al. 1991, Horsley et al. 1996; Le Douarin et al. 1996 |
| 18a | Cbx6 | PA14827.0 | SWISS-PROT | Q9DBY5 | Kawai et al. 2001 |
| PC14827.1 | FANTOM2 | 9530005K03 | |||
| 18b | PC14827.2 | FANTOM2 | G630026N14 | ||
| 19 | Cbx2 (M33) | PA1164.0 | SWISS-PROT | P30658 | Pearce et al. 1992 |
| 20 | Cbx4 (MPc2) | PA1166.0 | SWISS-PROT | O55187 | Alkema et al. 1997 |
| 21 | Cbx8 (MPc3) | PA6755 | SWISS-PROT | Q9QXV1 | Hemenway et al. 2000 |
| 22a | Cbx7 | PC11218.0 | FANTOM2 | B230307D15 | |
| 22b | PC11218.1 | GenPept | AAH21398 | R. Strausberg 2002, GenBank submission | |
| 23 | MsI-3 | PB3758.0 | GenPept | NP_034962 | Prakash et al. 1999 |
| 24 | Tex189/MRG15 | PB5593.0 | GenPept | NP_077751 | Lopez-Fernandez and del Mazo 1996; Carninci et al. 2000; Shibata et al. 2000; Bertram and Pereira-Smith 2001 |
| 28a | Myst1 | PC9534.0 | FANTOM2 | 1110001P03 | |
| 28b | PC9534.1 | FANTOM2 | 4833401K19 | ||
| 32a | EnoyICoA protein | PC16290.0 | FANTOM2 | 4930453121 | |
| 33 | CdyI | PB1292.0 | GenPept | NP_034011 | Lahn and Page 1999; Carninci et al. 2000 |
| 38 | SRG3 | PB5215.0 | GenPept | NP_033237 | Jeon et al. 1997 |
| 40a | MPP8 | PB15875.0 | GenPept | NP_076262 | Carninci et al. 2000; Shibata et al. 2000 |
Proteins listed in FANTOM2 VPS obtained from either GenPept or SWISS-PROT are indicated with their references cited. Left-hand column; Numbering used to refer to the gene in Table 3