Table 2.
Frequencies of the Zinc Finger Domains in the Mouse Transcriptome
| InterPro | Name | Total in the RTPS | Novel | Homolog to other organisms | |
|---|---|---|---|---|---|
| IPR000882 | C2H2 type | 506 | 126 | 82 | |
| IPR001841 | RING finger | 196 | 64 | 25 | |
| IPR001909 | KRAB | 134 | 61 | 22 | |
| IPR001781 | LIM | 60 | 10 | 2 | |
| IPR001965 | PHD finger | 52 | 19 | 5 | |
| IPR002219 | Protein kinase C phorbol ester/diacylglycerol binding | 46 | 7 | 9 | |
| IPR001628 | C4-type steroid receptor | 44 | 1 | 0 | |
| IPR000315 | B-box | 37 | 7 | 1 | |
| IPR000571 | C-x8-C-x5-C-x3-H type | 32 | 14 | 3 | |
| IPR001878 | Knuckle, CCHC type | 27 | 13 | 3 | |
| IPR000306 | FYVE type | 21 | 7 | 1 | |
| IPR003604 | U1-like | 20 | 8 | 1 | |
| IPR001164 | GCS-type | 18 | 4 | 4 | |
| IPR001876 | Ran-binding protein | 17 | 2 | 3 | |
| IPR001594 | DHHC type | 17 | 13 | 2 | |
| IPR002893 | MYND type | 14 | 5 | 3 | |
| IPR000379 | GATA type | 12 | 0 | 1 | |
| IPR000433 | ZZ type | 12 | 2 | 0 | |
| IPR001293 | TRAF type | 9 | 1 | 1 | |
| IPR001562 | Tec/Btk domain | 9 | 1 | 0 | |
| IPR000058 | AN1-like | 7 | 2 | 0 | |
| IPR004217 | Tim10/DDP type | 6 | 0 | 3 | |
| IPR002857 | CXXC type | 6 | 2 | 0 | |
| IPR003000 | Silent information regulator protein Sir2 | 5 | 0 | 4 | |
| IPR002653 | A20-like | 4 | 0 | 0 | |
| IPR004181 | MIZ type | 4 | 0 | 0 | |
| IPR003957 | Histone-like transcription factor | 4 | 0 | 0 | |
| IPR001275 | DM DNA-binding | 3 | 2 | 0 | |
| IPR004198 | C5HC2 type | 3 | 0 | 0 | |
| IPR002515 | C2HC type | 3 | 0 | 1 | |
| IPR003126 | Zn-finger (putative), N-recognin | 3 | 1 | 1 | |
| IPR003079 | Nuclear receptor ROR | 3 | 1 | 0 | |
| IPR003655 | KRAB-related | 3 | 3 | 0 | |
| IPR001510 | NAD+ ADP-ribosyltransferase | 2 | 0 | 0 | |
| IPR000380 | Prokaryotic DNA topoisomerase I | 2 | 0 | 0 | |
| IPR001529 | DNA-directed RNA polymerase, M/15 kD subunit | 2 | 1 | 0 | |
| IPR000197 | TAZ finger | 2 | 0 | 0 | |
| IPR000967 | NF-X1 type | 2 | 1 | 0 | |
| IPR002735 | Translation initiation factor IF5 | 2 | 0 | 1 | |
| IPR004457 | ZPR1 type | 2 | 1 | 0 | |
| IPR000465 | XPA protein | 1 | 0 | 0 | |
| IPR003071 | Orphan nuclear receptor, HMR type | 1 | 0 | 0 | |
| IPR003656 | BED finger | 1 | 0 | 0 | |
| IPR000678 | Nuclear transition protein 2 | 1 | 0 | 0 | |
| IPR000976 | Wilm's tumor protein | 1 | 0 | 0 | |
| IPR002906 | Ribosomal protein S27a | 1 | 0 | 0 | |
| Domains commonly associated with zinc finger domains | |||||
| IPR000210 | BTB/POZ domain | 124 | 50 | 25 | |
| IPR001214 | SET-domain of transcriptional regulator | 30 | 13 | 7 | |
| IPR003309 | SCAN domain | 22 | 6 | 2 | |
| IPR003879 | Butyrophylin C-terminal DUF | 14 | 2 | 1 | |
| IPR002999 | Tudor domain | 16 | 6 | 2 | |
| IPR001258 | NHL repeat | 10 | 3 | 3 | |
| TOTAL | 1573 | 459 | 218 | ||