Table 2.

Annotated and Translated CDS by CDS Programs

	Annotated	Translated	rsCDS	NCBI CDS	ProCrest	DECODER	Longest-ORF	Truncated-ORF	Manual
In-frame (complete)	10,759	10,759	5,287	8,343	9,477	9,517	10,409	0	43
In-frame (partial)	1,804	1,804	858	959	750	1,000	0	1,498	6
FS/stop (complete)	1,695	1,508	1,094	3	314	847	0	0	41
FS/stop (partial)	324	274	244	0	1	59	0	0	11
Total (clones)	14,582	14,345	7,483	9,305	10,542	11,423	10,409	1,498	101
Sensitivity (%)	—	—	52.2	64.9	73.5	79.6	72.6	10.4	0.7

The number of representative clones annotated and translated as complete or partial CDS is shown in the left two columns. “In-frame” means that the CDS region was determined without frameshift and/or stop codon error correction, and “FS/stop” means that the CDS region was completed after compensation for frameshifts or stop codons. The number of predicted CDS for each program, and its sensitivity, are shown in the following six columns. The sum of translated CDS regions calculated by each program was not 14,345 because some clones were translated by more than one program. 101 CDSs were not predicted by any program, but annotated manually