Table 7.

Tissue Anatomical Dictionary With Sequencing Coverage

stage	Tissue type I	Definition I	Definition II	Definition III	Definition IV	Definition V	Definition VI	Definition VII	ID	Strain	Organ, tissues, condition, age (E, embryo, L, lactation, Po, postnatal, Pr, pregnancy)	Clones (5′ + 3′)	Clusters (5′ + 3′)	Redundancy
	ES cells								C3		ES cells	11,918	6139	1.94
	ES cells								24		ES cells	17,811	5569	3.20
stage1	one-cell stage	body							74	C57BL/6J	in vitro fertilized eggs	18,123	6296	2.88
stage1	one-cell	body							BI	C57BL/6J	1 cell	1499	936	1.60
stage2	two-cell stage	body							BO	C57BL/6J	2 cells	12,531	6972	1.80
stage2	3-cell stage	body							BJ	C57BL/6J	3 cells	9	7	1.29
stage3	4-8 cell stage	body							BK	C57BL/6J	4 cells	309	197	1.57
stage3	4-8 cell stage	body							E8	C57BL/6J	embryo 8 cells	10,371	5593	1.85
stage4	morula	body							BL	C57BL/6J	morula	854	526	1.62
stage4	blastocyst	body							I1	C57BL/6J	blastocyst	10,671	5822	1.83
stage5	blastocyst	body							O1	C57BL/6J	blastocyst	1110	1023	1.09
stage7	embryo	body							BN	C57BL/6J	E5 whole body	1297	822	1.58
stage8	embryo	body							56	C57BL/6J	E6 whole body	565	513	1.10
stage10	embryo	body							C4	C57BL/6J	E7 whole body	11,016	6117	1.80
stage12	embryo	body							57	C57BL/6J	E8 whole body	21,971	9466	2.32
stage14	embryo	body							D0	C57BL/6J	E9 whole body	14,853	8885	1.67
stage15	embryo	body							B1	C57BL/6J	E 9.5 partenogenotic embryo	9904	5903	1.68
stage16	embryo	body							26	C57BL/6J	E10 whole body	15,322	6536	2.34
stage16	embryo	body							34	C57BL/6J	E10 whole body	1801	1338	1.35
stage16 + stage17	embryo	body							28	C57BL/6J	E10 + E11 whole body	17,265	7330	2.36
stage18	embryo	body							27	C57BL/6J	E11 whole body	12,053	4397	2.74
stage18	embryo	body	upper body						62	C57BL/6J	E11 upper body	475	431	1.10
stage18	embryo	head							62	C57BL/6J	E11 head	3507	2886	1.22