Table 1.
Comparison of Ortholog Groups Identified by OrthoMCL vs. INPARANOID
| Total | OrthoMCLa | INPARANOID | Grouped by both (∩)b | Identical groups | Coherent groups | |
|---|---|---|---|---|---|---|
| # Protein sequences | 33,062 | 10,849 (33%) | 11,357 (34%) | 10,597 (98/93%) | 8,629 (81%)c | 10,229 (97%)c |
| Fly data set | 13,288 | 5,133 (39%) | 5,550 (42%) | 5,006 (98/90%) | 4,058 (81%) | 4,820 (96%) |
| Worm data set | 19,774 | 5,716 (29%) | 5,807 (29%) | 5,591 (98/96%) | 4,571 (82%) | 5,409 (97%) |
| # Groups | 4,061 | 4,135 | 3,735 (92/90%)d | 3,888/3,912e (96/95%)d |
a
Using inflation index I = 1.5 (see text).
b
Percentages indicate percent of sequences grouped by either OrthoMCL (left) or INPARANOID (right).
c
Percent of sequences grouped by both OrthoMCL and INPARANOID.
d
Percent of OrthoMCL groups (left); percent of INPARANOID groups (right).
e
OrthoMCL groups entirely contained within INPARANOID groups (left); INPARANOID groups entirely contained within OrthoMCL groups (right).