Table 3.
Mitochondrial-Like Contigs and Links Obtained From the Assemble of Halocynthia roretzi EST Sequences
| From...To
|
|||||||
|---|---|---|---|---|---|---|---|
| Name | EST No. | L (bp) | Contig | mDNA | % Id | Genes | No. poly(A) ESTs |
| Link1/Hr-1 | 3 | 698 | 1...698 | 10219...10921 | 96.4 | ND5 partial | — |
| Link1/Hr-5 | 3 | 700 | 1...683 | 11242...11925 | 96.1 | ND5 end + Nc | 2 |
| Link2/Hr-2 | 2 | 731 | — | — | — | Mouse glycoprotein (AJ012754) | — |
| Link2/Hr-6 | 2 | 612 | 1...579 | 3044...3624 | 97.1 | ND4 end + Nc | 2 |
| Hr-3 | 19 | 1788 | 1...1766 | 6809...8544 | 97.6 | CO2 end + Cytb | 8 |
| Hr-4 | 2 | 542 | 10...520 | 3890...4399 | 94.3 | T end + ND6 + Nc | 1 |
| Hr-7 | 4 | 956 | 1...930 | 8915...9839 | 97.4 | ND2 end | 2 |
| Link3/Hr-9 | 3 | 705 | 1...683 | 14027...14702 | 98.5 | ND1 end + ATP6 | 2 |
| Link3/Hr-10 | 1 | 562 | 557...1 | 13114...13671 | 96.2 | 16S rRNA end + ND1 start | — |
| Link4/Hr-11 | 1 | 571 | 1...566 | 181...748 | 98.6 | CO1 partial | — |
| Link4/Hr-12 | 1 | 641 | 1...641 | 1424...2065 | 99.2 | COI end + ATP8 + ND3 | — |
| Hr-16 | 412 | 1146 | 21...1121 | 11998...13100 | 99.0 | 16S rRNA partial | 151 |
| Total | 453 | 9652 | 97.5 | ||||
The boundaries of the similarity region between the contigs and the Halocynthia roretzi mtDNA sequence (AB024528) and the respective identity percentage are reported. tRNA genes are indicated by the amino acid transported. (Nc) noncoding region. Gene boundaries according to Yokobori et al. (1999).
The number of ESTs with a poly(A) stretch is also reported for each contig.