Table 1.

The Efficiency of the Basic Algorithm for the Repeat Structure

Substring family	Real reads	Simulated reads	Count 12-mer with errors	REPuter
unique	66.1%	47.8%	50%	69.33%
repeated twice	16.46%	11.99%	14%	14.78%
repeated 3 times	0%	22.11%	21%	15.89%
repeated 4 times	14.25%	4.24%	4%	0
repeated 5 times	0%	4.39%	3%	0
the rest	3.19%	9.47%	8%	0