Table 6.

Overall Performance on Chromosomes 4, 21, and 22 with TSSs Determined Based on Mapped Full-Length cDNA Sequences from DBTSS (Sugano Laboratory) and the Counting Criterion From Fickett and Hatzigeorgiou (1997)

	TP	FP	Total # of TSSs	Total # of predictions	Se	ppv	ASM	CC
Dragon GSF	162	213	576	2627	0.2812	0.4320	2.0000	0.3486
FirstEF	166	718	576	7451	0.2881	0.1877	3.7273	0.2326
FirstEF (CpG+)	162	477	576	4683	0.2812	0.2535	2.9091	0.2670
Eponine	156	160	576	5178	0.2708	0.4936	1.3636	0.3657

According to the criterion of Fickett and Hatzigeorgiou (1997), a known gene is counted as a TP prediction if in the region [-200,+100] relative to the real TSS there were predicted TSSs. All other predictions falling into the region [+101, EndOfGene] relative to the real TSS for the known gene are counted as FP predictions