Table 7.
Overall Performance on Chromosomes 4, 21, and 22 with TSSs Determined Based on Mapped Full-Length cDNA Sequences From DBTSS (Sugano Laboratory)
| TP | FP | Total # of TSSs | Total # of predictions | Se | ppv | ASM | CC | |
|---|---|---|---|---|---|---|---|---|
| Dragon GSF | 228 | 175 | 576 | 2627 | 0.3958 | 0.5657 | 1.4545 | 0.4732 |
| FirstEF | 270 | 619 | 576 | 7451 | 0.4687 | 0.3037 | 3.7273 | 0.3773 |
| FirstEF (CpG+) | 264 | 380 | 576 | 4683 | 0.4583 | 0.4099 | 2.8182 | 0.4335 |
| Eponine | 186 | 130 | 576 | 5178 | 0.3229 | 0.5886 | 2.0000 | 0.4360 |
The maximum allowed distance between the predicted TSS and real TSS is 250 nt