Table 2.
BLASTN Comparison of Cattle BESs With Human and Mouse Genome Sequences
| BLAST results | Human genome | Mouse genome |
|---|---|---|
| BESs used for comparative analysisa | 46,621 | 46,621 |
| BESs with significant BLAST hitsb | 11,877 | 4,103 |
| Significant BLAST hitsc | 13,716 (29.4%) | 4,713 (10.1%) |
| Single BLAST hits | 10,732 (90.4%) | 3,704 (90.2%) |
| Gene hitsd | 8,621 (62.9%) | 2,864 (60.8%) |
| Gene hits in single BLAST hit set | 6,665 (62.1%) | 2,228 (60.2%) |
| Paired-ends, both with BLAST hits | 1,242 | 183 |
| Consistent paired-end BLAST hitse | 1,106 | 172 |
| Consistent paired-end BLAST hits with <300 Kbp distance in reference genome | 1,011 | 162 |
a
Number of BESs with ≥100 bp of contiguous nonrepetitive cattle sequence
b
Number of BESs with BLAST hits having E < e-5
c
Total number of BLAST hits generated from 11,877 BESs
d
Number of BLAST hits annotated as genes in the human or mouse genome. These regions include coding and noncoding sequences
e
Number of paired-end hits where both ends matched the same human/mouse chromosome