Table 1.
Number of Source Genes, Total Number of Genes, Number of Connections, and the Ratio of Connections per Source Gene in Each Comprehensive Target Network
|
ChIP network
|
||||||
|---|---|---|---|---|---|---|
| Network | in silico network | mutant network | ren | simon | iyer | lee |
| Source genes | 38 | 187 | 2 | 9 | 3 | 83 |
| Genes | 5583 | 5555 | 130 | 567 | 207 | 2351 |
| Connections | 23446 | 27252 | 131 | 1208 | 453 | 4235 |
| Connections per source gene | 617.0 | 145.7 | 65.5 | 134.2 | 151.0 | 51.0 |
The maximal possible number of target genes in each network is the complete gene set of the yeast Saccharomyces cerevisiae (∼6200 genes).