Table 4.
Part of the Data Shown in Figure 4
| Source gene 1 | Network 1 | Source gene 2 | Network 2 | P value | ppi | mi | mips | goTermMapper | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genes for which the biological process is unknown (SGD) | ||||||||||||||||
| YEL033W | mutant | BUD21 | mutant | 2.18E-14 | ||||||||||||
| KIN3 | mutant | GAS1 | mutant | 9.16E-26 | cell growth/maintenance | |||||||||||
| KIN3 | mutant | BUD14 | mutant | 1.12E-20 | ||||||||||||
| YEL0008W | mutant | CLB2 | mutant | 1.41E-20 | metabolism | |||||||||||
| YEL008W | mutant | ERG2 | mutant | 2.08E-18 | ||||||||||||
| YEL008W | mutant | ERG28 | mutant | 3.64E-25 | ||||||||||||
| YEL008W | mutant | SWI4 | mutant | 1.12E-21 | ||||||||||||
| YEL008W | mutant | GCN4 | mutant | 1.61E-15 | ||||||||||||
| YHL029C | mutant | ANP1 | mutant | 1.28E-26 | metabolism | |||||||||||
| YHL029C | mutant | CKB2 | mutant | 9.49E-18 | ||||||||||||
| YHL029C | mutant | CLB2 | mutant | 7.38E-43 | ||||||||||||
| YHL029C | mutant | ERG2 | mutant | 1.57E-34 | ||||||||||||
| YHL029C | mutant | ERG28 | mutant | 1.18E-50 | ||||||||||||
| YHL029C | mutant | ERG3 | mutant | 1.12E-20 | ||||||||||||
| YHL029C | mutant | GCN4 | mutant | 3.44E-30 | ||||||||||||
| YHL029C | mutant | RTG1 | mutant | 3.44E-32 | ||||||||||||
| YHL029C | mutant | SPF1 | mutant | 1.52E-13 | ||||||||||||
| YHL029C | mutant | SWI4 | mutant | 2.56E-64 | ||||||||||||
| YHL029C | mutant | UBR1 | mutant | 8.29E-25 | ||||||||||||
| Genes with similar target sets as SWI6 | ||||||||||||||||
| SWI6 | ChIP (Simon) | FKH2 | ChIP (Simon) | 5.02E-76 | no | no | cell cycle | |||||||||
| SWI6 | ChIP (Simon) | MBP1 | ChIP (Lee) | 1.14E-65 | yes | yes | yes | cel growth/maintenance | ||||||||
| SWI6 | ChIP (Lee) | MBP1 | ChIP (Lee) | 8.60E-54 | yes | yes | yes | metabolism | ||||||||
| SWI6 | ChIP (Simon) | SWI4 | ChIP (Iyer) | 3.24E-51 | no | yes | ||||||||||
| SWI6 | ChIP (Lee) | SWI4 | ChIP (Lee) | 4.82E-49 | no | yes | ||||||||||
| SWI6 | ChIP (Simon) | ACE2 | ChIP (Simon) | 3.28E-48 | no | yes | ||||||||||
| SWI6 | ChIP (Simon) | SWI6 | ChIP (Lee) | 6.01E-46 | no | no | no | |||||||||
| SWI6 | ChIP (Lee) | SWI6 | ChIP (Simon) | 6.01E-46 | no | no | no | |||||||||
| SWI6 | ChIP (Simon) | NDD1 | ChIP (Simon) | 4.12E-45 | no | |||||||||||
| SWI6 | ChIP (Simon) | NDD1 | ChIP (Lee) | 1.54E-28 | no | |||||||||||
| SWI6 | ChIP (Simon) | SWI5 | ChIP (Simon) | 7.51E-28 | no | yes | ||||||||||
| SWI6 | ChIP (Simon) | ACE2 | ChIP (Lee) | 1.71E-20 | no | yes | ||||||||||
| SWI6 | ChIP (Simon) | FKH2 | ChIP (Lee) | 4.99E-20 | no | no | ||||||||||
| SWI6 | ChIP (Simon) | SKN7 | ChIP (Lee) | 3.48E-19 | no | |||||||||||
| SWI6 | ChIP (Lee) | SWI4 | ChIP (Iyer) | 5.79E-18 | no | yes | ||||||||||
| SWI6 | ChIP (Simon) | MCM1 | ChIP (Simon) | 1.94E-17 | no | no | no | |||||||||
| SWI6 | ChIP (Lee) | MBP1 | in-silico | 1.03E-16 | yes | yes | yes | |||||||||
| SWI6 | ChIP (Simon) | STB1 | ChIP (Lee) | 1.82E-16 | no | no | ||||||||||
| SWI6 | ChIP (Simon) | SWI5 | ChIP (Lee) | 2.52E-15 | no | yes | ||||||||||
The target set similarity for the particular source gene/network combination is indicated by the P value. yes; the particular interaction is confirmed by a reference network, no: both genes are present in the respective reference network, but no interaction is reported; ppi2, protein-protein interaction network, mi3, co-citation network, mips, mips network; the last column contains the GO term describing the set of genes according to GO Term Mapper http://genome-www4.stanford.edu/cgi-bin/SGD/GO/goTermMapper).