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. Author manuscript; available in PMC: 2014 May 29.
Published in final edited form as: Future Med Chem. 2011 Mar;3(3):367–390. doi: 10.4155/fmc.10.282

Table 2. Root mean square deviation values for Ca overlays.

Structure RMSD (Å) Structure RMSD (Å) Structure RMSD (Å)
1XU7_a 2.139 2RBE_c 0.341 3D4N_c 2.463
1.624 0.355 0.404

1XU7_b 1.925 2RBE_d 0.915 3D4N_d 2.452
0.364 0.505 0.416

1XU7_c 1.944 3BYZ_a 0.543 3D5Q_a 2.051
0.345 0.452 0.329

1XU7_d 1.928 3BYZ_b 0.528 3D5Q_b 1.906
0.304 0.443 0.376

1XU9_a 2.227 3BYZ_c 0.366 3D5Q_c 0.974
1.621 0.328 0.302

1XU9_b 2.519 3BYZ_d 0.877 3D5Q_d 1.940
0.414 0.440 0.426

1XU9_c 2.524 3BZU_a 0.865 3EY4_a 0.654
0.439 0.456 0.553

1XU9_d 2.487 3BZU_b 1.436 3EY4_b 0.483
0.332 0.343 0.484

2BEL_a 1.176 3BZU_c 0.663 3EY4_c 0.383
0.797 0.269 0.458

2BEL_b 3.045 3BZU_d 0.620 3EY4_d 0.909
0.815/0.816 0.387 0.509

2BEL_c 4.390 3CH6_a 0.837 3FCO_a 1.646
0.444 0.223 0.585

2BEL_d 2.997 3CH6_b 3.906 3FCO_b 1.609/1.608
0.633 0.218 0.462/0.461

2IRW_a 0.820 3CH6_d 3.873 3FRJ_a 1.969
0.241 0.186 0.566

2IRW_b 0.822 3CH6_e 0.857 3FRJ_b 2.480
0.237 0.231 0.714

2IRW_c 0.404 3CZR_a 2.490 3H6K_a 0.817
0.259 0.612 0.441

2IRW_d 0.791 3CZR_b 2.005 3H6K_b 0.740
0.262 1.003 0.256

2IRW_e 0.387 3D3E_a 1.975 3H6K_c 0.729
0.279 0.891 0.451

2IRW_f 0.820 3D3E_b 1.975 3H6K_d 0.561
0.309 0.457 0.360

2IRW_g 0.837 3D3E_c 2.021 3HFG_a 0.673
0.257 0.743 0.538

2IRW_h 0.831 3D3E_d 2.014 3HFG_b 1.465
0.250 0.748 0.333

2RBE_a 0.669 3D4N_a 1.936 3HFG_c 0.594
0.587 0.408 0.414

2RBE_b 0.380 3D4N_b 2.472 3HFG_d 0.561
0.353 0.304 0.373

For each protein molecule (indicated by the lowercase letter) in each crystal structure of human 11β-HSD1, the Cα atoms were superimposed on those of 2ILT_a and the RMSD was calculated using the Sybyl software [101]. 2ILT_a was used as the reference structure simply because it is the only structure of 11β-HSD1 with only one protein chain in the structure. The numbers in normal type are for the whole protein and the numbers in bold are for the residues around the substrate and cofactor binding sites (T40-G47, T64-S67, G91-F98, N119-L126, K138-V142, V168-K187 and L215-M233). Note that for the whole protein 3FCO_b has three Cα atoms with alternate conformations, giving rise to different values for the RMSD. The 2BEL_b, 3CZR_a and 3CZR_b structures have, respectively, two, three and one Cα atoms with alternate conformations, but in these structures the differences, at least to four significant figures, make no difference to the RMSD when superimposed on 2ILT_a. For the binding-site residues, the 2BEL_b structure has different RMSD values for the two conformations. RMSD: Root mean square deviation.