Table 4.
Chromosome | Human |
Mouse |
Rat |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
10kb upstream |
5′ UTR | CDS | 3′ UTR | 10kb upstream |
5′ UTR | CDS | 3′ UTR | 10kb upstream |
5′ UTR | CDS | 3′ UTR | |
1 | 35.8 d | 27.5 | 27.3 | 22.1 d | 39.8 | 30.6 d | 29.6 | 32.8 | 43.3 d | 52.6 | 41.7 | 34.6 d |
2 | 62.2 e | 40.2 | 27.1 | 26.2 | 38.8 | 41.2 | 34.0 | 36.1 | 49.7 | 34.9 d | 37.1 d | 36.2 d |
3 | 51.4 | 18.1 d | 22.9 d | 24.8 | 41.9 | 42.6 | 31.2 | 40.3 | 48.4 | 33.6 d | 44.0 | 61.9 |
4 | 57.4 e | 29.2 | 28.6 | 27.5 | 49.4 e | 46.1 | 37.2 | 43.1 | 42.6 d | 36.1 d | 38.2 | 42.9 d |
5 | 54.0 | 43.8 | 28.9 | 30.4 | 49.1 e | 58.7 e | 38.8 e | 34.0 | 53.7 | 53.4 | 43.5 | 50.8 |
6 | 41.4 | 28.4 | 26.8 | 23.8 | 35.0 d | 37.7 | 32.4 | 38.5 | 49.2 | 54.6 | 44.7 | 39.1 d |
7 | 49.9 | 32.5 | 27.2 | 30.4 | 36.5 | 41.6 | 39.1 e | 44.9 | 60.2 e | 49.9 | 49.0 | 51.8 |
8 | 52.2 | 27.6 | 27.0 d | 29.7 | 48.7 e | 33.6 d | 39.6 e | 50.4 e | 50.5 | 49.1 | 45.2 | 50.4 |
9 | 46.1 | 28.9 | 30.3 | 35.1 e | 40.2 | 42.9 | 36.4 | 44.8 | 47.4 | 51.5 | 41.2 | 66.4 e |
10 | 50.8 | 29.4 | 23.2 | 24.5 | 40.3 | 33.6 d | 34.2 | 40.1 | 54.3 | 66.4 e | 51.6 | 48.7 |
11 | 34.9 d | 37.4 | 27.7 | 24.4 | 48.2 e | 52.0 e | 39.5 e | 47.2 e | 48.8 | 33.9 d | 44.8 | 77.6 e |
12 | 42.4 | 27.4 | 26.0 d | 16.4 d | 42.3 | 38.5 | 36.4 | 50.9 e | 77.7 | 69.1 e | 84.5 e | 61.1 |
13 | 84.8 e | 47.6 e | 31.8 | 48.1 e | 34.0 d | 36.2 | 30.3 | 37.6 | 42.5 d | 54.6 | 42.6 | 55.2 |
14 | 56.7 e | 32.7 | 26.2 d | 30.2 | 40.6 | 40.7 | 31.7 | 40.6 | 42.0 d | 55.3 | 42.3 | 67.1 e |
15 | 47.0 | 27.0 d | 34.1 | 27.3 | 48.4 e | 41.9 | 39.1 e | 41.4 | 46.5 | 42.7 d | 39.3 | 73.3 e |
16 | 51.6 | 41.3 | 49.4 e | 47.9 e | 39.8 | 40.9 | 29.9 | 41.3 | 65.1 | 63.3 e | 43.9 | 65.9 e |
17 | 33.8 d | 60.5 e | 31.5 | 18.2 d | 46.4 e | 46.4 | 41.9 e | 39.8 | 46.3 | 53.8 | 41.5 | 37.4 d |
18 | 76.0 e | 30.1 | 35.7 | 35.1 e | 40.4 | 38.3 | 37.8 | 37.0 | 53.8 | 48.8 | 39.3 | 25.2 d |
19 | 25.0 d | 50.9 e | 52.7 e | 27.6 | 43.0 | 51.3 e | 37.3 | 38.4 | 55.4 | 48.9 | 52.4 | 58.1 |
20 | 49.9 | 33.7 | 37.0 e | 20.7 d | 64.0 e | 58.9 e | 73.7 e | 78.3 e | ||||
21 | 41.6 | 19.2 d | 32.5 | 21.7 d | ||||||||
22 | 42.9 | 51.4 e | 41.3 e | 28.3 | ||||||||
X | 26.8 d | 25.0 d | 21.4 d | 12.9 d | 20.5 d | 19.8 d | 14.8 d | 14.5 d | 31.0 d | 30.3 d | 23.2 d | 34.4 d |
Yf | 45.2 | 98.9 e | 42.6 e | 16.7 d | 26.7 d | 84.1 e | 13.3 d | 0.0 d | ||||
| ||||||||||||
Mean density | 48.3 | 37.0 | 31.6 | 27.1 | 40.5 | 42.8 | 33.5 | 37.8 | 51.1 | 49.6 | 45.9 | 53.2 |
Std. Dev | 13.6 | 16.8 | 8.0 | 8.5 | 7.3 | 12.5 | 7.4 | 11.4 | 9.9 | 10.9 | 12.6 | 15.3 |
putative DREs defined as the 19 bp DRE centered core containing sequence with a MS score ≥ 0.8473
Mbp = million basepairs
regions are defined using the genomic locations in the refGene database from the UCSC Geriome Browser
putative DRE density is less than the lower limit of the 99% confidence interval of the mean
putative DRE density is greater than the upper limit of the 99% confidence interval of the mean
no sequence data for chromosome Y is available in rn4 build of the rat genome