Skip to main content
. 2014 May 29;10(5):e1004338. doi: 10.1371/journal.pgen.1004338

Table 2. List of week/strong oscillator cell line discriminative genes.

Gene name Gene ID p-value Description (DAVID) KEGG_PATHWAY
APOBEC3F 200316 1.44E-04 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
AQR 9716 1.13E-05 aquarius homolog (mouse) Spliceosome
ARGLU1 55082 3.55E-04 arginine and glutamate rich 1
ATP8B3 148229 1.32E-04 ATPase, class I, type 8B, member 3
CAPN6 827 2.94E-05 calpain 6
CBX7 23492 5.13E-05 chromobox homolog 7
CHD4 1108 1.56E-05 chromodomain helicase DNA binding protein 4
CHRNB4 1143 9.40E-05 cholinergic receptor, nicotinic, beta 4
CTCF 10664 1.06E-04 CCCTC-binding factor (zinc finger protein)
CTSB 1508 1.19E-04 cathepsin B Lysosome, antigen processing and presentation
DTNB 1838 1.19E-04 dystrobrevin, beta
FBXO17 115290 6.52E-05 F-box protein 17
FOXA1 3169 1.70E-04 forkhead box A1
GNG11 2791 9.70E-06 guanine nucleotide binding protein (G protein), gamma 11 Chemokine signalling pathway
GPRASP2 114928 4.88E-05 G protein-coupled receptor associated sorting protein 2
HNF4G 3174 3.76E-05 hepatocyte nuclear factor 4, gamma Maturity onset diabetes of the young
HYAL2 8692 2.82E-05 hyaluronoglucosaminidase 2 Glycosaminoglycan degradation
IFNGR2 3460 5.83E-05 interferon gamma receptor 2 (interferon gamma transducer 1) Cytokine-cytokine receptor interaction, Jak-STAT signalling pathway, Natural killer cell mediated cytotoxicity
INO80C 125476 1.36E-04 INO80 complex subunit C
KHDRBS3 10656 5.49E-05 KH domain containing, RNA binding, signal transduction associated 3
LOXL2 4017 1.26E-04 lysyl oxidase-like 2
MAP1B 4131 6.93E-05 microtubule-associated protein 1B
NINJ1 4814 3.18E-05 ninjurin 1
NUDT4P1 440672 1.31E-04 nudix (nucleoside diphosphate linked moiety X)-type motif 4; nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1
PDHX 8050 1.52E-04 pyruvate dehydrogenase complex, component X
PITX2 5308 9.84E-05 paired-like homeodomain 2 TGF-beta signalling pathway
PPARδ 5467 1.96E-05 peroxisome proliferator-activated receptor delta PPAR signalling pathway, Wnt signalling pathway, pathways in cancer, acute myeloid leukemia
PPFIBP1 8496 9.75E-05 PTPRF interacting protein, binding protein 1 (liprin beta 1)
RAB6B 51560 6.76E-05 RAB6B, member RAS oncogene family
RBPMS 11030 1.16E-04 RNA binding protein with multiple splicing
RFWD2 64326 6.53E-05 ring finger and WD repeat domain 2 p53 signalling pathway, hsa04120:Ubiquitin mediated proteolysis
SCN5α 6331 1.06E-04 sodium channel, voltage-gated, type V, alpha subunit
SEC14L2 23541 7.94E-05 SEC14-like 2 (S. cerevisiae)
SLC37A3 84255 5.70E-05 solute carrier family 37 (glycerol-3-phosphate transporter), member 3
SLC39A5 283375 8.42E-05 solute carrier family 39 (metal ion transporter), member 5
SNORD58A 26791 3.04E-04 U58 small nucleolar RNA
SNRPA 6626 1.70E-04 small nuclear ribonucleoprotein polypeptide A Spliceosome
SPARC 6678 2.15E-05 secreted protein, acidic, cysteine-rich (osteonectin)
ST3GAL5 8869 1.02E-04 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 Glycosphingolipid biosynthesis
STARD8 9754 1.33E-04 StAR-related lipid transfer (START) domain containing 8
TBCD 6904 4.37E-05 tubulin folding cofactor D
TSPAN9 10867 4.31E-05 tetraspanin 9
USP22 23326 3.03E-04 ubiquitin specific peptidase 22
WASF3 10810 3.81E-06 WAS protein family, member 3 Adherens junction, Fc gamma R-mediated phagocytosis
XYLT2 64132 4.02E-05 xylosyltransferase II Chondroitin sulfate biosynthesis, heparan sulfate biosynthesis

Raw p-values are derived using moderated t-test between groups of strong versus weak oscillators.