Table 3. MARDs (%) for contaminated reconstructions.

Contaminant fraction	Method	I A	I B	I AB	I AB2
Bovine IFN-γ
0.0000	LSQ	0.83 ± 0.2	0.28 ± 0.2	0.41 ± 0.1	–
	OPT	0.27 ± 0.1	0.24 ± 0.1	0.22 ± 0.1	–
0.0047	LSQ	0.53 ± 0.1	0.17 ± 0.0	0.17 ± 0.0	–
	OPT	0.20 ± 0.0	0.17 ± 0.0	0.09 ± 0.0	–
0.0113	LSQ	1.13 ± 0.1	0.16 ± 0.0	0.34 ± 0.0	–
	OPT	0.42 ± 0.0	0.16 ± 0.0	0.14 ± 0.0	–
0.0231	LSQ	2.28 ± 0.1	0.17 ± 0.0	0.69 ± 0.0	–
	OPT	0.83 ± 0.0	0.17 ± 0.0	0.29 ± 0.0	–
BAF–emerin complex
0.0000	LSQ	0.08 ± 0.0	0.64 ± 0.1	0.20 ± 0.0	0.20 ± 0.0
	OPT	Not feasible
0.0047	LSQ	2.32 ± 0.0	0.08 ± 0.0	0.85 ± 0.0	0.56 ± 0.0
	OPT	1.91 ± 0.0	0.08 ± 0.0	0.77 ± 0.1	0.53 ± 0.0
0.0113	LSQ	4.45 ± 0.1	0.08 ± 0.0	0.90 ± 0.1	0.42 ± 0.1
	OPT	2.41 ± 0.2	0.08 ± 0.0	0.56 ± 0.1	0.27 ± 0.1
0.0231	LSQ	8.72 ± 0.1	0.08 ± 0.0	1.41 ± 0.1	0.60 ± 0.1
	OPT	1.31 ± 0.1	0.08 ± 0.0	0.31 ± 0.1	0.21 ± 0.0