Table 2.
Reference genome bins garnering the most metagenomic reads, organized by station and domain (top 10 Bacteria, 4 Eukarya, 2 Archaea, and 2 viruses)
| Domain | Taxon | Genes L −1 | Domain | Taxon | Genes L −1 |
|---|---|---|---|---|---|
| Station 10 | |||||
| Bacteria |
Synechococcus sp. CB0205 |
1.46 × 1012 |
Eukarya |
Thalassiosira oceanica CCMP1005 |
1.26 × 1011 |
| Bacteria |
SAR86 E |
4.65 × 1011 |
Eukarya |
Micromonas sp. RCC299 |
8.27 × 1010 |
| Bacteria |
SAR86 D |
2.55 × 1011 |
Eukarya |
Tetrahymena thermophila SB210 |
2.41 × 1010 |
| Bacteria |
Alphaproteobacterium HIMB5 |
2.32 × 1011 |
Eukarya |
Strombidinopsis sp. SopsisLIS2011 |
1.67 × 1010 |
| Bacteria |
Cand. Pelagibacter sp. HTCC7211 |
2.22 × 1011 |
|
|
|
| Bacteria |
Cand. Pelagibacter ubique |
1.54 × 1011 |
Archaea |
Nitrosopumilus maritimus SCM1 |
1.73 × 1010 |
| Bacteria |
SAR86 C |
1.39 × 1011 |
Archaea |
Cand. Nitrosopumilus koreensis AR1 |
1.02 × 1010 |
| Bacteria |
Gammaproteobacterium HIMB55 |
1.33 × 1011 |
|
|
|
| Bacteria |
Synechococcus sp. CB0101 |
1.19 × 1011 |
Virus |
Synechococcus phage S-RSM4 |
1.74 × 1011 |
| Bacteria |
Gammaproteobacterium HIMB30 |
1.15 × 1011 |
Virus |
Synechococcus phage S-SKS1 |
1.74 × 1011 |
| Station 3 | |||||
| Bacteria |
Cand. Pelagibacter sp. HTCC7211 |
2.79 × 1011 |
Eukarya |
Micromonas sp. RCC299 |
2.28 × 1010 |
| Bacteria |
Alphaproteobacterium HIMB5 |
2.02 × 1011 |
Eukarya |
Tetrahymena thermophila SB210 |
4.93 × 109 |
| Bacteria |
SAR86 D |
1.64 × 1011 |
Eukarya |
Alexandrium tamarense CCMP1771 |
3.71 × 109 |
| Bacteria |
SAR86 E |
1.33 × 1011 |
Eukarya |
Thalassiosira oceanica CCMP1005 |
3.49 × 109 |
| Bacteria |
Cand. Pelagibacter ubique |
1.17 × 1011 |
|
|
|
| Bacteria |
Alphaproteobacterium HIMB59 |
9.29 × 1010 |
Archaea |
Nitrosopumilus maritimus SCM1 |
3.01 × 109 |
| Bacteria |
SAR86 C |
8.58 × 1010 |
Archaea |
Cand. Nitrosoarchaeum limnia |
2.31 × 109 |
| Bacteria |
Synechococcus sp. WH 8109 |
7.33 × 1010 |
|
|
|
| Bacteria |
Cand. Pelagibacter ubique HTCC1062 |
6.37 × 1010 |
Virus |
Synechococcus phage S-RSM4 |
6.70 × 1010 |
| Bacteria |
SAR324 JCVI-SC AAA005 |
5.06 × 1010 |
Virus |
Synechococcus phage S-SKS1 |
2.57 × 1010 |
| Station 2 | |||||
| Bacteria |
Coraliomargarita akajimensis DSM 45221 |
3.31 × 1012 |
Eukarya |
Phaeocystis antarctica |
1.51 × 1012 |
| Bacteria |
Cand. Puniceispirillum marinum IMCC1322 |
7.46 × 1011 |
Eukarya |
Phytophthora sojae |
1.02 × 1012 |
| Bacteria |
Gammaproteobacterium HIMB55 |
6.13 × 1011 |
Eukarya |
Emiliania hu×leyi |
9.44 × 1011 |
| Bacteria |
Synechococcus sp. WH 8109 |
6.07 × 1011 |
Eukarya |
Aplanochytrium kerguelense |
7.60 × 1011 |
| Bacteria |
SAR116 HIMB100 |
5.95 × 1011 |
|
|
|
| Bacteria |
Cand. Pelagibacter sp. HTCC7211 |
5.09 × 1011 |
Archaea |
Cand. Nitrosopumilus salaria |
1.54 × 1010 |
| Bacteria |
SAR324 JCVI-SC AAA005 |
4.61 × 1011 |
Archaea |
Methanomassiliicoccus sp. M × 1-Issoire |
5.89 × 109 |
| Bacteria |
Gammaproteobacterium HTCC2207 |
3.91 × 1011 |
|
|
|
| Bacteria |
Verrucomicrobiae DG1235 |
3.39 × 1011 |
Virus |
Synechococcus phage S-RIP1 |
9.55 × 108 |
| Bacteria |
Prochlorococcus marinus str. AS9601 |
3.16 × 1011 |
Virus |
Phaeocystis globosa virus |
6.20 × 108 |
| Station 23 | |||||
| Bacteria |
Cand. Pelagibacter sp. HTCC7211 |
1.36 × 1012 |
Eukarya |
Tetrahymena thermophila SB210 |
2.96 × 1010 |
| Bacteria |
Alphaproteobacterium HIMB5 |
9.43 × 1011 |
Eukarya |
Protocruzia adherens Boccale |
2.84 × 1010 |
| Bacteria |
SAR86 D |
9.31 × 1011 |
Eukarya |
Strombidinopsis sp. SopsisLIS2011 |
2.82 × 1010 |
| Bacteria |
Alphaproteobacterium HIMB59 |
7.03 × 1011 |
Eukarya |
Pseudo-nitzschia multiseries |
1.79 × 1010 |
| Bacteria |
SAR86 E |
6.95 × 1011 |
|
|
|
| Bacteria |
Cand. Pelagibacter ubique |
5.17 × 1011 |
Archaea |
Methanosarcina acetivorans C2A |
1.60 × 109 |
| Bacteria |
SAR86 C |
4.69 × 1011 |
Archaea |
Methanosarcina barkeri str. Fusaro |
1.37 × 109 |
| Bacteria |
Cand. Pelagibacter ubique HTCC1062 |
2.74 × 1011 |
|
|
|
| Bacteria |
SAR324 JCVI-SC AAA005 |
2.33 × 1011 |
Virus |
Phaeocystis globosa virus |
1.01 × 1011 |
| Bacteria |
Alphaproteobacterium HIMB114 |
2.31 × 1011 |
Virus |
Synechococcus phage S-SM2 |
4.62 × 1010 |
| Station 25 | |||||
| Bacteria |
Cand. Pelagibacter sp. HTCC7211 |
6.83 × 1011 |
Eukarya |
Pyraminomonas obovata CCMP722 |
8.58 × 109 |
| Bacteria |
Alphaproteobacterium HIMB5 |
4.13 × 1011 |
Eukarya |
Phaeocystis antarctica |
6.34 × 109 |
| Bacteria |
Alphaproteobacterium HIMB59 |
2.35 × 1011 |
Eukarya |
Thalassiosira oceanica CCMP1005 |
5.67 × 109 |
| Bacteria |
Cand. Pelagibacter ubique |
2.07 × 1011 |
Eukarya |
Volvox carteri f. nagariensis |
4.93 × 109 |
| Bacteria |
Prochlorococcus marinus str. AS9601 |
1.87 × 1011 |
|
|
|
| Bacteria |
Prochlorococcus marinus str. MIT 9301 |
1.70 × 1011 |
Archaea |
Methanosarcina acetivorans C2A |
9.95 × 108 |
| Bacteria |
SAR86 E |
1.67 × 1011 |
Archaea |
Methanomassiliicoccus sp. M × 1-Issoire |
8.48 × 108 |
| Bacteria |
SAR86 D |
1.61 × 1011 |
|
|
|
| Bacteria |
Coraliomargarita akajimensis DSM 45221 |
1.45 × 1011 |
Virus |
Phaeocystis globosa virus |
4.57 × 1010 |
| Bacteria |
Gammaproteobacterium HTCC2207 |
1.29 × 1011 |
Virus |
Synechococcus phage S-SM2 |
2.36 × 1010 |
| Station 27 | |||||
| Bacteria |
Prochlorococcus marinus str. AS9601 |
9.43 × 1012 |
Eukarya |
Phaeocystis antarctica |
3.04 × 1010 |
| Bacteria |
Prochlorococcus marinus str. MIT 9301 |
8.49 × 1012 |
Eukarya |
Tetrahymena thermophila SB210 |
2.25 × 1010 |
| Bacteria |
Cand. Pelagibacter sp. HTCC7211 |
5.70 × 1012 |
Eukarya |
Ale×andrium tamarense CCMP1771 |
1.56 × 1010 |
| Bacteria |
Prochlorococcus marinus str. MIT 9215 |
4.46 × 1012 |
Eukarya |
Monosiga brevicollis |
1.35 × 1010 |
| Bacteria |
Alphaproteobacterium HIMB5 |
3.96 × 1012 |
|
|
|
| Bacteria |
Prochlorococcus marinus str. MIT 9312 |
3.13 × 1012 |
Archaea |
Methanomassiliicoccus sp. M×1-Issoire |
8.73 × 109 |
| Bacteria |
Cand. Pelagibacter ubique |
2.22 × 1012 |
Archaea |
Aciduliprofundum sp. MAR08-339 |
6.10 × 109 |
| Bacteria |
Prochlorococcus marinus |
1.75 × 1012 |
|
|
|
| Bacteria |
Cand. Pelagibacter ubique HTCC1062 |
1.31 × 1012 |
Virus |
Prochlorococcus phage P-SSM2 |
6.08 × 1011 |
| Bacteria | Alphaproteobacterium HIMB59 | 1.21 × 1012 | Virus | Synechococcus phage S-SM2 | 3.20 × 1011 |
Bacterial, archaeal, and viral reads were annotated against the NCBI RefSeq database. Eukaryotic reads were annotated against a custom database containing marine eukaryotic genomes and transcriptomes from NCBI and 112 of the Marine Microbial Eukaryote Transcriptome Sequencing Project datasets that were public at the time of analysis (http://marinemicroeukaryotes.org).