Table 3. List of biomass constituents with stoichiometric coefficients.
Biomass component | KEGG ID | Coefficient (mmol/gDW) | Biomass component | KEGG ID | Coefficient (mmol/gDW) |
---|---|---|---|---|---|
DNA | Lipids | ||||
dATP | C00131 | 0.002855 | 1-phosphatidyl-1D-myo-inositol | C01194 | 0.007777 |
dCTP | C00458 | 0.003128 | Phosphatidylcholine | C00157 | 0.08017 |
dGTP | C00286 | 0.003128 | Phosphatidylserine | C02737 | 0.01084 |
dTTP | C00459 | 0.002855 | Sphingomyelin | C00550 | 0.01141 |
Phosphatidylethanolamine | C00350 | 0.0153 | |||
RNA | Cholesterol | C00187 | 0.03525 | ||
ATP | C00002 | 0.01678 | Free fatty acids | 0.252268 | |
CTP | C00063 | 0.02167 | Dodecanoic acid | C02679 | 0.073 |
GTP | C00044 | 0.02263 | Tetradecanoic acid | C06424 | 0.09 |
UTP | C00075 | 0.01523 | Palmitic acid | C00249 | 0.166 |
Stearic acid | C01530 | 0.108 | |||
Proteins | Oleic acid | C00712 | 0.306 | ||
L-alanine | C00041 | 0.684 | Linoleic acid | C01595 | 0.198 |
L-cysteine | C00097 | 0.1297 | Arachidonic acid | C00219 | 0.058 |
L-aspartate | C00049 | 0.3194 | |||
L-glutamate | C00025 | 0.5263 | Essential molecules | ||
L-phenylalanine | C00079 | 0.2276 | Coenzyme A | C00010 | 0.00563 |
Glycine | C00037 | 0.5002 | Tetrahydrofolate | C00101 | 0.00563 |
L-histidine | C00135 | 0.1426 | Heme | C00032 | 0.00563 |
L-isoleucine | C00407 | 0.1603 | Undecaprenyl diphosphate | C04574 | 0.00563 |
L-lysine | C00047 | 0.2747 | Pyridoxal phosphate | C00018 | 0.00563 |
L-leucine | C00123 | 0.5988 | Tetrahydrobiopterin | C00272 | 0.00563 |
L-methionine | C00073 | 0.095 | ADP glucose | C00498 | 0.00563 |
L-asparagine | C00152 | 0.155 | UDP-N-acetyl-D-glucosamine | C00043 | 0.00563 |
L-proline | C00148 | 0.4197 | GDP mannose | C00096 | 0.00563 |
L-glutamine | C00064 | 0.2652 | Oxaloacetate | C00036 | 0.00563 |
L-arginine | C00062 | 0.5445 | Octanoyl-[acp] | C05752 | 0.00563 |
L-serine | C00065 | 0.7092 | Geranylgeranyl diphosphate | C00353 | 0.00563 |
L-threonine | C00188 | 0.3327 | |||
L-valine | C00183 | 0.3902 | Growth assoc. maintenance | ||
L-tryptophan | C00078 | 0.06729 | ATP+H2O→ADP+phosphate | 28.76 | |
L-tyrosine | C00082 | 0.09781 |
Note that the composition of free fatty acids is used both as a subcomponent of Lipids and as the acyl portion of other phospholipids.