Table 4.
DDRT-PCR transcripts identified by sequence homologies found in the NCBI sequence database
| Numbers | Primer pairs | Sources | Size (bp) | Blast similarity/species/accessions numbers | E-value | Max ident (%) |
|---|---|---|---|---|---|---|
| DD1 | H-T11C/H-AP8 | NS | 350 | Rho guanidine dissociation inhibitor/Tuber borchii/ABW17274 | 8e−09 | 71 |
| DD2 | H-T11G/H-AP15 | NS | 295 | Similar to 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase 1/Pyronema omphalodes CBS 100304/CCX33765.1| | 7e−31 | 61 |
| DD3 | H-T11C/H-AP8 | NS | 189 | Ras superfamily GTPase/Nannochloropsis gaditana/XP_005854920.1 | 6.2 | 37 |
| DD4 | H-T11A/H-AP6 | NS | 334 | Hypothetical protein slr0639/Synechocystis sp. PCC 6803/NP_442288.1 | 0.29 | 50 |
| DD5 | H-T11G/H-AP13 | S | 261 | GABA permease/Shigella dysenteriae/EGP24113 | 6e−46 | 98 |
| DD6 | H-T11G/H-AP12 | S | 333 | Zinc finger protein ZFAT isoform X2/Falco peregrinus/XP_005237283.1 | 5.3 | 31 |
| DD7 | H-T11G/H-AP9 | S | 346 | Hypothetical protein/Actinomyces georgiae/WP_005870647.1 | 0.022 | 32 |
| DD8 | H-T11A/H-AP2 | S | 334 | Hypothetical protein slr0639/Synechocystis sp. PCC 6803/NP_442288.1 | 3.3 | 60 |
| DD9 | H-T11A/H-AP7 | S | 239 | Hypothetical protein COCC4DRAFT_155570/Bipolaris maydis ATCC 48331/ENH98510 | 2e−14 | 58 |
| DD10 | H-T11A/H-AP6 | S | 327 | Glycerophosphoryl diester phosphodiesterase/Escherichia coli/EGJ96270 | 5e−69 | 98 |
| DD11 | H-T11C/H-AP20 | S | 370 | Transcript antisense to ribosomal RNA protein/Ajellomyces capsulatus/EGC42647.1 | 7e−24 | 69 |
| DD12 | H-T11A/H-AP9 | S | 403 | Diacylglycerol kinase [Escherichia coli]/WP_001472712.1 | 4e−44 | 96 |
| DD13 | H-T11A/H-AP2 | S | 334 | Protein of unknown function [Pyronema omphalodes CBS 100304]/CCX05279.1 | 0.20 | 26 |