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Effect of the window-size on the three window-size dependent summary statistics. The figure shows scans along the same data using three different window-sizes: 1, 5, and 10 kb, with step lengths 500 bp, 2.5 kb and 5 kb respectively. Parameters: G = 150, ρ = 0.001, m = 1, θ = 0.001, tm = 100, ts = 50, N = 500. MFPH, Fst SNP and Fst haplotype are averaged over 100 simulations. A to C: MFPH, D to F: FST haplotype, G to I: FST SNP.
