Table 2.
Transcripts encoding proteins predicted to have key roles in nematode-host interactions and inferred to be enriched in the adult stage of Dictyocaulus filaria.
| Designation of ortholog/homolog (species) | Sequence code D. filaria | FPKM | Sequence code D. viviparus | FPKM | Accession number | E-value; bit score | References |
|---|---|---|---|---|---|---|---|
| Cathepsin B peptidases, partial (Ac) | Dfil17598776 | 1805.7 | Dviv17666286 a | 261.3 | NCBI:AAC46878 | 4×10−108; 372.0 | Ranjit et al. (2008) |
| Dfil17598778 | 519.1 | Dviv17666286 a | 261.3 | NCBI:AAC46878 | 7×10−49; 175 | ||
| Dfil17598712 | 1190.3 | Dviv17666286 a | 261.3 | NCBI:AAC46878 | 1×10−79; 278 | ||
| Dfil17598717 | 1186.1 | Dviv17667352 a | 481.2 | NCBI:AAC46878 | 1×10−29; 112 | ||
| Dfil17598298 | 4039.7 | Dviv17666286 a | 261.3 | NCBI:AAC46878 | 4×10−50; 179 | ||
| Dfil17599746 | 2431.6 | Dviv17670798 a | 111.2 | NCBI:AAC46878 | 5×10−28; 105 | ||
| Dfil17615864 | 113.2 | Dviv17666286 a | 46.7 | NCBI:AAC46878 | 1×10−84; 294 | ||
| Fatty-acid and retinol-binding protein 1 (Ac) | Dfil17600048 | 6114.5 | Dviv17667361 a | 310.9 | NCBI:AAM93667 | 3×10−41; 211 | Basavaraju et al. (2003); Bath et al. (2009) |
| Dfil17611331 | 172.8 | Dviv17679991 | 7.1 | NCBI:AAM93667 | 6×10−56; 165 | ||
| Dfil17603002 | 1627.1 | Dviv17667690 a | 395.0 | NCBI:AAM93667 | 6×10−31; 100 | ||
| Beta-galactoside- binding lectin - galectin (Hc) | Dfil17603450 | 211.8 | Dviv17668724 a | 145.3 | UniProt:O44126 | 8×10−118; 404 | Hewitson et al. (2009) |
| Dfil17631226 | 407.1 | Dviv17676002 | 20.3 | UniProt:O44126 | 3×10−14; 60 | ||
| Dfil17621266 | 241.9 | Dviv17676002 | 20.3 | UniProt:O44126 | 3×10−70; 246 | ||
| Dfil17624969 | 245.3 | Dviv17676887 | 42.2 | UniProt:O44126 | 9×10−61; 215 | ||
| Dfil17608910 | 326.9 | Dviv17671378 a | 200.2 | UniProt:O44126 | 4×10−18; 66 | ||
| Dfil17606742 | 473.0 | Dviv17670877 a | 90.8 | UniProt:O44126 | 0; 538 | ||
| Secreted protein 6 precursor (Ac) | Dfil17616091 | 268.3 | Dviv17675465 | 30.7 | NCBI:AAO63578 | 2×10−14; 62 | Cantacessi et al. (2009) |
| Dfil17603746 | 1145.5 | Dviv17670798 a | 90.1 | NCBI:AAO63578 | 9×10−08; 40 | ||
| Dfil17608171 | 330.2 | Dviv17675465 | 30.7 | NCBI:AAO63578 | 2×10−13; 59 | ||
| Transthyretin-like protein (Bm) | Dfil17617022 | 408.5 | Dviv17674180 | 14.9 | NCBI:EDP38814 | 2×10−21; 82 | Hewitson et al. (2009) |
| Cystatin CPI (Nb) | Dfil17600089 | 519.7 | Dviv17683021 | 23.9 | NCBI:BAB59011 | 7×10−47; 194 | Dainichi et al., (2001) |
| Macrophage migration inhibitory factor (Bm) | Dfil17618988 | 233.2 | Dviv17667255 | 20.9 | NCBI:CAC70155.1 | 7×10−43; 126 | Pastrana et al. (1998) |
| Dfil17647749 | 116.9 | Dviv17676513 | 9.14 | NCBI:CAC70155.1 | 6×10−23; 75 | ||
| Glutathione peroxidase (Hc) | Dfil17600550 | 106.6 | Dviv17666277 | 17.2 | NCBI:AAT28332 | 4×10−28; 105 | Hartman et al. (2001) |
| Dfil17625009 | 232.7 | Dviv17679072 | 18.2 | NCBI:AAT28332 | 5×10−111; 407 |
FPKM, fragments per kilobase of transcript per million total sequence fragments mapped; Ac, Ancylostoma caninum; Bm, Brugia malayi; Hc, Haemonchus contortus; Nb, Nippostrongylus brasiliensis.
a
Genes of Dictyocaulus viviparus inferred to be highly transcribed.