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. 2014 Apr 30;6(5):1174–1185. doi: 10.1093/gbe/evu092

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© The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 2.— — Neighbor-joining cladogram based on 1,512 core protein clusters describing genetic relationships among 124 Staphylococcus aureus strains. The 75 strains highlighted as blue text are from this study, whereas the remaining 49 strains are from the NCBI RefSeq database (details provided in supplementary tables S1 and S2, Supplementary Material online). The genomes from the RefSeq database are labeled either by their popular strain name (e.g., COL, Newman, N315, Mu50, and MW2) or accession numbers (those with NC prefix, such as NC_002953). Gray dots represent VSSA strains, red dots represent VISA, and those without dots are strains with unknown vancomycin susceptibility profiles. The blue star indicates strains harboring rpoB H481Y/L/N mutation. The MLST type (outer ring) represented by more than two strains is indicated, whereas others are singletons. The MLST types and accession number of all 49 completed genomes are provided in supplementary table S2, Supplementary Material online.