Skip to main content
. 2014 Apr 1;42(10):6300–6313. doi: 10.1093/nar/gku246

Table 1.

DNA sequence of the oligonucleotide duplexes used in the studya

Name of duplex DNA sequence of oligonucleotide substrates
G-34 C TAT CCA CTA CTA TCC TCA TGA TCT ACT TCA ATC
G ATA GGT GAT GAT AGG AGT ACT AGA TGA AGT TAG
T•X(NXN) T CAT GAG ATG GGT ACC AGC NTN CGG AGC TAG ATA GCA ATT
A GTA CTC TAC CCA TGG TCG NXN GCC TCG ATC TAT CGT TAA
T•Y(CXC) T CAT GAG ATG GGT ACC AGC GTG CGG AGC TAG ATA GCA ATT
A GTA CTC TAC CCA TGG TCG CYC GCC TCG ATC TAT CGT TAA
Hx•C A ATT GCT ATC TAG CTC CGC XCG CTG GTA CCC ATC TCA TGA
T TAA CGA TAG ATC GAG GCG CGC GAC CAT GGG TAG AGT ACT
G•N A ATT GCT ATC TAG CTC CGC GCG CTG GTA CCC ATC TCA TGA
T TAA CGA TAG ATC GAG GCG NGC GAC CAT GGG TAG AGT ACT
T•G A ATT GCT ATC TAG CTC CGC TGG CTG GTA CCC ATC TCA TGA
T TAA CGA TAG ATC GAG GCG GCC GAC CAT GGG TAG AGT ACT
T•ϵA-mHa-ras G CAT GGC ACT ATA CTC TTC TTG ACC TGC TGT GTC TAA GAT
C GTA CCG TGA TAT GAG AAG AXC TGG ACG ACA CAG ATT CTA
T•ϵA-hp53 C ACT GGA GTC TTC CAG TGT GAT GCT TGT GAG GAT GGG CCT
G TGA CCT CAG AAG GTC ACA CTX CGA ACA CTC CTA CCC GGA
T•Z 28 mer G TGT CAC CAC CGC TCA TGT ACA GAG CTG
C ACA GTG GTG GCG AGT ZCA TGT CTC GAC
8oxoA•N 28 mer G TGT CAC CAC CGC TCA NGT ACA GAG CTG
C ACA GTG GTG GCG AGT XCA TGT CTC GAC
U•G 28 mer G TGT CAC CAC CGC TCA UGT ACA GAG CTG
C ACA GTG GTG GCG AGT GCA TGT CTC GAC
T•Z 15 mer T CAT GTA CAG AGC TG
A GTZ CAT GTC TCG AC
8oxoA•N 15 mer T CAX GTA CAG AGC TG
A GTN CAT GTC TCG AC
U•G 15 mer T CAU GTA CAG AGC TG
AC
A GTG CAT GTC TCG

aFollowing symbols are used to designate the modified and regular DNA bases: X is for 8oxoA and Hx; Y is for THF, ϵA, 2oxoA, 8oxoG, DHU, ϵC and αA; Z is for ϵA, Hx and G; N is for C, G, A and T.