Table 2.
Replication factors are significantly over-represented in the GFP-H2A.Bbd compared to the GFP-H2A pull-down
| Category | Term | Count | % | p-value | Bonferroni | Benjamini | FDR |
|---|---|---|---|---|---|---|---|
| GOTERM BP FAT | GO:0006396-RNA processing | 90 | 18.6 | 1.61E-55 | 1.66E-52 | 1.66E-52 | 2.56E-52 |
| GOTERM BP FAT | GO:0006412∼translation | 73 | 15.1 | 7.94E-48 | 8.15E-45 | 4.07E-45 | 1.26E-44 |
| GOTERM BP FAT | GO:0006397∼mRNA processing | 60 | 12.4 | 5.30E-39 | 5.43E-36 | 1.81E-36 | 8.40E-36 |
| GOTERM BP FAT | GO:0008380-RNA splicing | 53 | 11.0 | 1.18E-37 | 1.21E-34 | 3.02E-35 | 1.87E-34 |
| GOTERM BP FAT | GO:0016071∼mRNA metabolic process | 61 | 12.6 | 2.38E-36 | 2.44E-33 | 4.88E-34 | 3.77E-33 |
| GOTERM BP FAT | GO:0042254∼ribosome biogenesis | 40 | 8.3 | 6.15E-34 | 6.31 E-31 | 1.05E-31 | 9.75E-31 |
| GOTERM BP FAT | GO:0022613∼ribonucleoprotein complex biogenesis | 41 | 8.5 | 2.40E-31 | 2.46E-28 | 3.52E-29 | 3.80E-28 |
| GOTERM BP FAT | GO:0006364∼rRNA processing | 24 | 5.0 | 3.70E-19 | 3.80E-16 | 4.75E-17 | 5.87E-16 |
| GOTERM BP FAT | GO:0016072∼rRNA metabolic process | 24 | 5.0 | 5.21 E-1 9 | 5.35E-16 | 5.94E-17 | 8.26E-16 |
| GOTERM BP FAT | GO:0034470∼ncRNA processing | 26 | 5.4 | 3.25E-13 | 3.34E-10 | 3.34E-11 | 5.16E-10 |
| GOTERM BP FAT | GO:0034660∼ncRNA metabolic process | 26 | 5.4 | 8.46E-11 | 8.68E-08 | 7.89E-09 | 1.34E-07 |
| GOTERM BP FAT | GO:0006325∼chromatin organization | 31 | 6.4 | 7.43E-10 | 7.62E-07 | 6.35E-08 | 1.18E-06 |
| GOTERM BP FAT | GO:0051276∼chromosome organization | 34 | 7.0 | 5.25E-09 | 5.39E-06 | 4.14E-07 | 8.32E-06 |
| GOTERM BP FAT | GO:0006260-DNA replication | 20 | 4.1 | 1.39E-08 | 1.42E-05 | 1.02E-06 | 2.20E-05 |
| GOTERM BP FAT | GO:0006259∼DNA metabolic process | 31 | 6.4 | 5.34E-07 | 5.48E-04 | 3.66E-05 | 8.47E-04 |
| GOTERM BP FAT | GO:0016568∼chromatin modification | 22 | 4.5 | 8.78E-07 | 9.01 E-04 | 5.63E-05 | 0.00139236 |
| GOTERM BP FAT | GO:0034622∼cellular macromolecular complex assembly | 21 | 4.3 | 9.26E-07 | 9.50E-04 | 5.59E-05 | 0.00146848 |
Top enrichment terms for the factors enriched in the H2A.Bbd/H2A sample. The terms and their related p-values for Biological Processes (BP) are displayed. Category: original database/resource where the terms orient; Term: enriched term associated with the gene list; Count: gene in the list involved in the term; Percentage: involved genes/total genes; p-value: modified Fisher exact p-value, EASE score.