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. Author manuscript; available in PMC: 2014 Jun 2.
Published in final edited form as: Curr Protoc Chem Biol. 2013 Jun;5(2):157–169. doi: 10.1002/9780470559277.ch130028

Table 2. Combination motif scores.

Each iteration shows the motif that was added and the exclusions applied to that glycan. The Exclusions column gives the ID of the excluded motifs and the number of excluded glycans in square brackets. The names of the excluded motifs are given at the bottom of the table.

Itr Score Gain Glycans ID Motif Exclusions
0 5.99 - 109 19 Terminal Galactose AnyLinkage 180 [21]; 85 [28]; 40 OR 13 [1]; 185 [4]
1 10.39 4.40 68 23 Terminal GalNAcb 168 OR 94 [8]
2 11.03 0.65 61 107 Tn Antigen
3 11.21 0.18 62 59 Terminal GlcNAca1-6
4 11.37 0.16 63 25 GalNAcb 4′ Substituted
5 11.49 0.11 64 121 Core 6 O-glycan
6 11.55 0.07 65 189 Forssman Antigen (GalNAca1-3GalNAcb) Not Blood Group A
7 11.61 0.06 66 188 Gala1-3Gal Not Blood Group B
8 11.67 0.06 67 161 Blood Group H Type 3
9 11.72 0.05 68 207 MDPLys
10 11.76 0.04 69 181 Phosphorylated Glycans
11 11.79 0.03 70 155 Blood Group B Type 2
12 11.82 0.03 70 31 GalNAca 4′ Substituted
13 11.87 0.05 71 207 MDPLys 51 [2]
14 11.90 0.04 72 166 Blood Group I GlcNAcb1-3(GlcNAcb1-6)Galb
15 11.92 0.01 73 91 Rhamnose Anywhere
16 11.93 0.01 74 186 Internal Gala1-4Galb 94 OR 95 [1]
ID Excluded Motifs
180 Sulfated Glycans
85 Fuca1-2
40 Glcb 6′ Substituted
13 Terminal Gala1-6
185 Terminal Gala1-4Galb
168 Blood Group Sd(a), CAD (GalnAcb1-4(Siaa2-3)Gal)
94 Neu5Aca2-3 Anywhere
51 Terminal GlcNAcb1-4
94 Neu5Aca2-3 Anywhere
95 Terminal Neu5Aca2-3