Table 1.

SNVs and short indels (< 10 bp) compared to the BN reference

Strain	SNVs	SNVs in gene regions (± kb)	SNVs in cds	NS coding SNVs	Short indels	Indels in cds
DA/O	3.02 M	0.87 M	30440	6639	0.34 M	1206
DA/K	2.94 M	0.86 M	31130	6706	0.30 M	1243
E3	3.09 M	0.91 M	31426	6432	0.36 M	1294
PVG	2.99 M	0.86 M	31318	6432	0.30 M	1241

Cds = Coding sequence.