TABLE 1.
Strains, origins, and atpD and 16S rDNA sequence accession numbers
| Species | Straina | Origin | atpD accession no.b | 16S rDNA accession no.b |
|---|---|---|---|---|
| Bifidobacterium lactis | DSM 10140T | Yoghurt | AY487153 | X89513 |
| Bifidobacterium animalis | ATCC 25527T | Rat feces | AY487152 | X70971 |
| Bifidobacterium coryneforme | ATCC 25911T | Honeybee hindgut | AY487148 | M58733 |
| Bifidobacterium breve | ATCC 15700T | Intestine of infant | AY487154 | AB006658 |
| Bifidobacterium adolescentis | ATCC 15703T | Intestine of adult | AY487144 | M58729 |
| Bifidobacterium choerinum | ATCC 27686T | Swine feces | AY487147 | D86186 |
| Bifidobacterium longum | NCC 2705 | Intestine of adult | NC_004307 | NC_004307 |
| Bifidobacterium infantis | ATCC 15697T | Intestine of infant | AY487150 | D86184 |
| Bifidobacterium suis | ATCC 27533T | Swine feces | AY487151 | M58743 |
| Bifidobacterium bifidum | ATCC 29521T | Infant feces | AY487145 | M84777 |
| Bifidobacterium dentium | ATCC 27534T | Dental caries | AY487149 | D86183 |
| Bifidobacterium catenulatum | ATCC 27539T | Intestine of adult | AY487146 | M58732 |
| Lactobacillus gallinarum | ATCC 33199T | Chicken crop | AY487160 | AJ242968 |
| Lactobacillus crispatus | NCTC 4 | Human vagina | AY487158 | AJ242969 |
| Lactobacillus amylolyticus | DSM 11614T | Beer wort | AY487155 | Y17361 |
| Lactobacillus gasseri | DSM 20243T | Human | AY487156 | M58820 |
| Lactobacillus johnsonii | ATCC 33200T | Human blood | AY487162 | AJ002515 |
| Lactobacillus acidophilus | ATCC 4356T | Human | AY487161 | M58802 |
| Lactobacillus amylovorus | DSM 20531T | Cattle waste corn fermentation | AY487157 | M58805 |
| Lactobacillus rhamnosus | DSM 20021 | Unknown | AY487159 | M58815 |
| Lactobacillus hilgardii | DSM 20051 | Wine | AJ508914 | M58821 |
| Lactobacillus helveticus | NCDO 2712T | Cheese | AY487163 | X61141 |
| Lactobacillus brevis | DSM 2647 | Human feces | AJ508913 | D37785 |
| Lactobacillus plantarum | WCFS1 | Human oral cavity | NC_004567 | NC_004567 |
| Lactococcus lactis subsp. lactis | IL-1403 | Unknown | NC_002662 | NC_002662 |
| Oenococcus oeni | IOB84.13 | Wine | AJ491851 | NA |
| Oenococcus oeni | JCM 6125 | Wine | NA | AB022924 |
| Leuconostoc mesenteroides | NCDO 523 (= DSM 20343) | Fermenting olives | AJ508912 | X95978 |
| Streptococcus thermophilus | ATCC 19258 | Cheese | NA | AY188354 |
| Streptococcus thermophilus | CHCC2136 | Unknown | AY090612 | NA |
| Streptococcus pyogenes | M1 GAS | Nasal cavity | NC_002737 | NC_002737 |
| Listeria momocytogenes | EGD-e | Food | NC_003210 | NC_003210 |
| Pediococcus parvulus | JCM 5889 (= DSM 20332) | Silage | AJ515143 | D88528 |
| Pediococcus damnosus | DSM 20331 | Beer | AJ515142 | AJ318414 |
| Mycobacterium leprae | TN | Human | NC_002677 | NC_002677 |
| Escherichia coli | K-12 | NC_000913 | NC_000913 | |
| Streptomyces coelicolor | A3 | NC_003888 | NC_003888 | |
| Bacterioides thetaiotaomicron | VP1 5482 | Human feces | NC_004663 | NC_004663 |
| Enterococcus faecalis | V583 | NC_004668 | NC_004668 | |
| Clostridium perfringens | Str. 13 | Human | NC_003366 | NC_003366 |
a
T = type strain. ATCC, American Type Culture Collection; DSM, Deutsche Sammlung von Mikroorganismen; NCC, Nestlé Culture Collection; JCM, Japanese Collection of Microorganisms; NCDO, National Collection of Dairy Organisms; NCTC, National Collection of Type Cultures; VPI, Virginia Polytechnic Institute.
b
For the strains whose genome sequences are available the atpD gene and 16S rDNA sequences were retrieved from the complete bacterial genome, and the accession numbers are indicated. NA, not available.