Table 4.
dbSNP rs# | N | rs11636419 | rs45564134 | rs17861162 | rs1038376 | rs1042389 | rs707265 | rs3181842 | rs7246465 | rs28969420 | rs10511395 | rs1054190 | rs1054191 | rs3732359 | rs3732360 | rs3814057 | rs3814058 | rs6600893 | rs6851533 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Allele | G | – | G | T | C | A | C | T | T | A | T | A | A | T | C | C | C | C | |
South African | 30 | 0.24 | 0.12 | 0.15 | 0.34 | 0.15 | 0.23 | 0.25 | 0.29 | 0.20 | 0.14 | 0.18 | 0.26 | 0.56 | 0.52 | 0.25 | 0.27 | 0.28 | 0.36 |
AFR | 691 | 0.14 | 0.16 | 0.16 | 0.31 | 0.28 | 0.18 | 0.24 | 0.21 | 0.23 | 0.16 | 0.04* | 0.16 | 0.34* | 0.33* | 0.47* | 0.47* | 0.19 | 0.19* |
ASW | 66 | 0.17 | 0.15 | 0.19 | 0.31 | 0.2 | 0.21 | 0.28 | 0.26 | 0.15 | 0.17 | 0.07 | 0.17 | 0.44 | 0.43 | 0.42 | 0.42 | 0.24 | 0.24 |
LWK | 116 | 0.13 | 0.16 | 0.16 | 0.3 | 0.36* | 0.16 | 0.24 | 0.18 | 0.30 | 0.22 | 0.05* | 0.21 | 0.37 | 0.35 | 0.47* | 0.47* | 0.17 | 0.17* |
YRI | 116 | 0.14 | 0.16 | 0.16 | 0.33 | 0.24 | 0.18 | 0.24 | 0.21 | 0.21 | 0.1 | 0.02* | 0.10* | 0.24* | 0.24* | 0.51* | 0.51* | 0.15 | 0.15* |
MKK# | 180 | N/A | N/A | N/A | N/A | 0.24 | 0.21 | 0.02* | N/A | N/A | 0.1 | 0.05* | 0.09* | 0.45 | 0.45 | 0.38 | N/A | 0.29 | 0.29 |
AMR | 355 | 0.08* | 0.01* | 0.08 | 0.43 | 0.16 | 0.22 | 0.22 | 0.23 | 0.07* | 0.15 | 0.11 | 0.15 | 0.76* | 0.73* | 0.2 | 0.2 | 0.35 | 0.35 |
CLM | 95 | 0.10 | 0.01* | 0.10 | 0.48 | 0.14 | 0.18 | 0.18 | 0.20 | 0.11 | 0.18 | 0.13 | 0.18 | 0.76* | 0.73* | 0.18 | 0.18 | 0.43 | 0.43 |
MXL | 69 | 0.09* | 0* | 0.09 | 0.39 | 0.15 | 0.23 | 0.23 | 0.23 | 0.04* | 0.13 | 0.08 | 0.13 | 0.78* | 0.74* | 0.2 | 0.2 | 0.27 | 0.27 |
PUR | 105 | 0.04* | 0.01* | 0.04* | 0.42 | 0.19 | 0.25 | 0.25 | 0.25 | 0.07* | 0.15 | 0.1 | 0.14 | 0.75* | 0.72* | 0.21 | 0.21 | 0.36 | 0.37 |
GIH# | 100 | N/A | N/A | N/A | N/A | 0.22 | 0.19 | 0* | N/A | N/A | 0.1 | 0.06 | 0.07* | 0.45 | 0.45 | 0.28 | N/A | 0.48* | 0.48 |
ASN | 523 | 0.22 | 0* | 0.22 | 0.14* | 0.28 | 0.35 | 0.35 | 0.33 | 0.03* | 0* | 0* | 0* | 0.47 | 0.46 | 0.48* | 0.48* | 0.28 | 0.28 |
CHB | 106 | 0.27 | 0.01* | 0.27 | 0.12* | 0.31 | 0.34 | 0.33 | 0.32 | 0.04* | 0* | 0* | 0* | 0.49 | 0.49 | 0.46 | 0.46 | 0.31 | 0.31 |
CHS | 112 | 0.22 | 0* | 0.22 | 0.16* | 0.26 | 0.37 | 0.37 | 0.33 | 0.02* | 0.01* | 0* | 0.01* | 0.39 | 0.38 | 0.55* | 0.55* | 0.25 | 0.25 |
JPT | 105 | 0.17 | 0.01* | 0.17 | 0.14* | 0.28 | 0.34 | 0.37 | 0.36 | 0.02* | 0* | 0* | 0* | 0.52 | 0.52 | 0.44 | 0.44 | 0.29 | 0.29 |
CHD# | 100 | N/A | N/A | N/A | N/A | 0.32 | 0.36 | 0* | N/A | N/A | 0.01* | 0* | 0* | 0.44 | 0.44 | 0.48* | N/A | 0.32 | 0.32 |
EUR | 514 | 0.08* | 0* | 0.07 | 0.26 | 0.21 | 0.39 | 0.40 | 0.38 | 0.06* | 0.16 | 0.13 | 0.16 | 0.79* | 0.76* | 0.17 | 0.17 | 0.49* | 0.49 |
CEU | 103 | 0.04* | 0* | 0.04* | 0.31 | 0.19 | 0.39 | 0.42 | 0.38 | 0.04* | 0.18 | 0.15 | 0.16 | 0.84* | 0.81* | 0.12* | 0.12* | 0.48* | 0.48 |
FIN | 100 | 0.11 | 0* | 0.10 | 0.17 | 0.19 | 0.43 | 0.43 | 0.43 | 0.06* | 0.06 | 0.05* | 0.06* | 0.72 | 0.7 | 0.21 | 0.21 | 0.45 | 0.45 |
GBR | 94 | 0.06* | 0* | 0.06 | 0.25 | 0.26 | 0.39 | 0.41 | 0.39 | 0.05* | 0.19 | 0.16 | 0.19 | 0.78* | 0.75* | 0.17 | 0.17 | 0.48* | 0.48 |
IBS | 107 | 0.04* | 0* | 0.04* | 0.25 | 0.36* | 0.29 | 0.29 | 0.29 | 0.07* | 0.11 | 0.07 | 0.11* | 0.86* | 0.82* | 0.14 | 0.14 | 0.46 | 0.46 |
TSI | 110 | 0.09* | 0* | 0.09 | 0.32 | 0.18 | 0.36 | 0.36 | 0.36 | 0.08 | 0.21 | 0.18 | 0.21 | 0.8* | 0.76* | 0.18 | 0.18 | 0.48* | 0.48 |
Indicate significant differences in allele frequency compared to the South Africans,
Allele frequencies were obtained from the HapMap project, while allele frequencies for other populations were obtained from the 1000 genomes project, AFR, African; ASW, Americans of African ancestry in SW USA; LWK, Luhya in Webuye (Kenya); YRI, Yoruba in Ibadan (Nigeria); MKK, Maasai in Kinyawa (Kenya); AMR, Ad mixed American; CLM, Colombians from Medellin (Colombia); MXL, Mexican ancestry from Los Angeles USA; PUR, Puerto Ricans from Puerto Rico; GIH, Gujarati Indian from Houston Texas; ASN, East Asian; CHB, Han Chinese in Bejing (China); CHS, Southern Han Chinese; JPT, Japanese in Tokyo (Japan); CHD, Chinese in Metropolitan Denver (Colorado); EUR, European; CEU, Utah residents with Northern and Western European ancestry; FIN, Finnish in Finland; GBR, British in England and Scotland; IBS, Iberian population in Spain; TSI, Toscani in Italy; N/A, not available.