Table 2. Comparison of assembly and genomic data for the specimens of Pyropia analyzed in this study.
| Species/Voucher/Year Collected | 36 mers | N50 | Velvet Contigs | Max Contig | mtDNA Length | Chloroplast Length |
|---|---|---|---|---|---|---|
| Py. perforata/LD-Ag 13037/1874† | 68,784,178 | 35,758 | 526 | 54,271 | 33,919 | 189,789 |
| Py. perforata/LD-Ag 13038/1874* | 5,194,297 | 15,937 | 321 | 43,667 | 33,921 | 189,789 |
| Py. perforata/LD-Ag 13031/unknown† | 18,738,480 | 54,271 | 114 | 99,206 | 32,662 | 189,789 |
| Py. perforata/LD-Ag 13032/unknown* | 4,758,357 | 36,270 | 67 | 55,056 | 32,662 | 189,789 |
| Py. perforata/UC 95735/1899* | 4,716,038 | 15,629 | 1,845 | 42,644 | 33,958 | 189,889 |
| Py. perforata/UC 1450590/1968† | 29,767,819 | 2,712 | 2,103 | 18,231 | 32,491 | 189,794 |
| Py. perforata/UC 2019900/2011* | 5,842,020 | 54,265 | 506 | 99,200 | 34,968 | 189,789 |
| Py. perforata/UC 2019901/2013† | 19,624,308 | 2,850 | 689 | 9,639 | 34,870 | 189,789 |
| Py. perforata/UC 2019902/2013* | 6,197,218 | 24,095 | 613 | 42,643 | 34,968 | 189,788 |
| Po. sanjuanensis/VK-11-00061/1968† | 27,059,510 | 54,271 | 36 | 99,206 | 40,042 | 189,788 |
| Po. perforata f. segregata/UC 807662/1895† | 35,213,087 | 4,879 | 912 | 23,135 | 35,144 | 189,752 |
| Po. perforata f. segregata/UC 95739/1895† | 20,234,514 | 437 | 4,249 | 13,714 | 35,142 | 189,752 |
| Py. fucicola/VK-11-00121/1968† | 35,473,374 | 20,526 | 304 | 70,564 | 35,035 | ~191,982 |
| Py. kanakaensis/Mumford #161/1973† | 27,347,099 | 34,197 | 153 | 94,550 | 38,463 | ~194,631 |
| Py. kanakaensis/UC 1863980/1999† | 24,529,495 | 23,010 | 1,484 | 51,361 | 39,300 | ~194,631 |
†denotes assemblies performed in Velvet using kmer = 31
*denotes assemblies performed in Velvet using kmer = 25
~estimate based on 97.5% of genome that was obtained
Py. denotes Pyropia
Po. denotes Porphyra