Table 2. Complex predictions in yeast and human.

Basic statistics of the complex prediction results in yeast and human, based on aligning known human complexes to the yeast interactome and vice versa (see Materials & Methods). Results are shown both for all complex predictions (All) and for the high-confidence subset (HC). #, number of; nr, non-redundant.

	Human to yeast		Yeast to human
Prediction type	All	HC	All	HC
# query complexes	1027	645	244	236
# predicted complexes (nr)	257	105	89	61
Total # complex components (nr)	604	372	464	325
Average # proteins per complex	6.4	5.93	6.37	5.67
Total # novel components (nr)	307	107	175	91
Average # novel components per complex	2.75	1.46	2.4	1.62
# entirely novel complexes (nr)	0	0	2	2