Table 1. Primers used in this study to amplify R2B and F strains of NDV.
Name | Primer sequence (5′–3′) | Genomic locationab | Expected size |
Strain R2B | |||
1Fc | ACCAAACAGAGAATCCGTGAA | 1–21 | 1900 bp |
1Rd | GTGAAGGTGGCCATCTTCACT | 1880–1900 | |
2F | ACAACACGGGCACAACTCGAC | 1741–1761 | 1559 bp |
2R | GATGAGTCCATCCTGGCACAA | 3280–3300 | |
3F | TTCCATCCCACTGAATGATCG | 3191–3211 | 2171 bp |
3R | AGGGTTACCGGTGATCAAGCC | 5342–5362 | |
4F | GGCTCTTTACAATCTGGCTGG | 5251–5271 | 2230 bp |
4R | GACTTAGCCATCCGAATCTGG | 7461–7481 | |
5F | GGTTGCGATTGCGTGAGTCAC | 7356–7376 | 2044 bp |
5R | GGTTGCGATTGCGTGAGTCAC | 9380–9400 | |
6F | CTAATGGAGGGATTCGCATAC | 9242–9262 | 2046 bp |
6R | CCCAATCTCCATTTCCAGGCG | 11268–11288 | |
7F | GTGCACTCATATGTCCTGACC | 11093–11113 | 1951 bp |
7R | CGTCGAGTGCAAGAGACTAGC | 13024–13044 | |
8F | CACCCTGTCATCCATTCAAGG | 12923–12943 | 2263 bp |
8R | CCCACCAAACAAAGATTTGGTGAATG | 15164–15186 | |
Strain F | |||
1Fc | ACCAAACAGAGAATCCGTAAGTTA | 1–24 | 2363 bp |
1Rd | GTTTCCGCGGCTGGGTTGACTCCCCT | 2338–2363 | |
2F | AGTCAACCCAGCCGCGGAAACAG | 2343–2365 | 2621 bp |
2R | GAGCTGCGGCCGCTGTTATTTG | 4943–4964 | |
3F | AACAGCGGCCGCAGCTCTGAT | 4948–4968 | 1353 bp |
3R | TACAACGCGTAGTTTTTTCTTAACTC | 6276–6301 | |
4F | AACTACGCGTTGTAGATGACCAAAG | 6288–6312 | 2078 bp |
4R | GCACTACGTATTTTGCCTTGTATCTC | 8351–8366 | |
5F | CAAAATACGTAATGGTAAATAATACGGGTAGGACATG | 8358–8383 | 1694 bp |
5R | TCAGCTTAGCGAAGATCCGTCCATTAACT | 10024–10052 | |
6F | CTTCGCTAAGCTGACAAAGAAGTTAAGGAACTG | 10039–10071 | 2805 bp |
6R | GTCTAGGCCTCTTACTCTCAGGTAATAG | 12817–12844 | |
7F | AGAGGCCTAGACAATATTGTCT | 12833–12854 | 2353 bp |
7R | ACCAAACAAAGATTTGGTGAATGACGAG | 15159–15186 |
Genomic location of strain R2B is based on the complete genomic sequence of NDV strain Mukteswar.
Genomic location of strain F is based on the complete genomic sequence of NDV strain La Sota.
F stands for forward primer.
R stands for reverse primer.