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. 2014 Jun 4;9(6):e98869. doi: 10.1371/journal.pone.0098869

Table 1. Primers used in this study to amplify R2B and F strains of NDV.

Name Primer sequence (5′–3′) Genomic locationab Expected size
Strain R2B
1Fc ACCAAACAGAGAATCCGTGAA 1–21 1900 bp
1Rd GTGAAGGTGGCCATCTTCACT 1880–1900
2F ACAACACGGGCACAACTCGAC 1741–1761 1559 bp
2R GATGAGTCCATCCTGGCACAA 3280–3300
3F TTCCATCCCACTGAATGATCG 3191–3211 2171 bp
3R AGGGTTACCGGTGATCAAGCC 5342–5362
4F GGCTCTTTACAATCTGGCTGG 5251–5271 2230 bp
4R GACTTAGCCATCCGAATCTGG 7461–7481
5F GGTTGCGATTGCGTGAGTCAC 7356–7376 2044 bp
5R GGTTGCGATTGCGTGAGTCAC 9380–9400
6F CTAATGGAGGGATTCGCATAC 9242–9262 2046 bp
6R CCCAATCTCCATTTCCAGGCG 11268–11288
7F GTGCACTCATATGTCCTGACC 11093–11113 1951 bp
7R CGTCGAGTGCAAGAGACTAGC 13024–13044
8F CACCCTGTCATCCATTCAAGG 12923–12943 2263 bp
8R CCCACCAAACAAAGATTTGGTGAATG 15164–15186
Strain F
1Fc ACCAAACAGAGAATCCGTAAGTTA 1–24 2363 bp
1Rd GTTTCCGCGGCTGGGTTGACTCCCCT 2338–2363
2F AGTCAACCCAGCCGCGGAAACAG 2343–2365 2621 bp
2R GAGCTGCGGCCGCTGTTATTTG 4943–4964
3F AACAGCGGCCGCAGCTCTGAT 4948–4968 1353 bp
3R TACAACGCGTAGTTTTTTCTTAACTC 6276–6301
4F AACTACGCGTTGTAGATGACCAAAG 6288–6312 2078 bp
4R GCACTACGTATTTTGCCTTGTATCTC 8351–8366
5F CAAAATACGTAATGGTAAATAATACGGGTAGGACATG 8358–8383 1694 bp
5R TCAGCTTAGCGAAGATCCGTCCATTAACT 10024–10052
6F CTTCGCTAAGCTGACAAAGAAGTTAAGGAACTG 10039–10071 2805 bp
6R GTCTAGGCCTCTTACTCTCAGGTAATAG 12817–12844
7F AGAGGCCTAGACAATATTGTCT 12833–12854 2353 bp
7R ACCAAACAAAGATTTGGTGAATGACGAG 15159–15186
a

Genomic location of strain R2B is based on the complete genomic sequence of NDV strain Mukteswar.

b

Genomic location of strain F is based on the complete genomic sequence of NDV strain La Sota.

c

F stands for forward primer.

d

R stands for reverse primer.