Table 2. Sequence information and summary statistics for Callinectes sapidus.
Locus | Length | % | S | NS | Syn | H | H d | π | θW | θπ | KJC | θπ/KJC |
ant | 414 | 40 | 33a | 2 | 32 | 54 | 0.757 | 0.003 | 4.509 | 0.011 | 0.019 | 0.567 |
atps | 227 | 46 | 27 | 0 | 27 | 39 | 0.662 | 0.005 | 3.689 | 0.009 | 0.003 | 3.215 |
tps | 368 | 13 | 22 | 5 | 17 | 19 | 0.313 | 0.001 | 3.006 | 0.008 | 0.054 | 0.152 |
hsp | 489 | 23 | 28 | 12 | 16 | 31 | 0.757 | 0.003 | 3.825 | 0.008 | 0.019 | 0.405 |
rpl | 191 | 36 | 11 | 1 | 10 | 23 | 0.819 | 0.009 | 1.503 | 0.008 | 0.014 | 0.574 |
Length, trimmed length of analyzed sequence; %, percent coverage of the complete mRNA reference sequence available on GenBank (ant: EF077712, tps: EU679406, hsp: DQ663760, rpl: FJ774832) and the partial mRNA of atps (HM217802); S, total number of segregating sites; NS, number of nonsynonymous segregating sites; Syn, number of synonymous segregating sites; H; number of haplotypes; Hd, haplotype diversity; π, nucleotide diversity; θW, Watterson's theta; θπ, theta pi, KJC, mean divergence between C. sapidus and C. similis, defined as the mean number of nucleotide differences per site between species.
Indicates one haplotype has a Syn and NS allele, therefore the value of S is 1 less than the sum of NS and Syn.