Table 1.
Gene | Forward primer (5′ to 3′) | Reverse primer (5′ to 3′) | Annealing temp. °C | Product size (bp) |
---|---|---|---|---|
speA1-3,6
[15] |
5′-GGACTAACAATCTCGCAAGAGG-3′ |
5′-TTACTTGGTTGTTAGGTAGACTTC-3′ |
54 |
696 |
speA4,5
[15] |
5′-GCTAACAACCTCACAAGAAG -3′ |
5′-TGCTTGAGTCAAGCGTCTC-3′ |
53 |
659 |
speC[15] |
5′-GATTTCTACTATTTCACC-3′ |
5′-AAATATCTGATCTAGTCCC-3′ |
44 |
584 |
speG[15] |
5′-CTTATGCAGATGAAAATTTAAAAGATT-3′ |
5′-AAAGCAAAGGGGGGAGAATAG-3′ |
53.2 |
664 |
speI[15] |
5′-ATGAGTAGTGTGGGAGTTATTAA-3′ |
5′-ATGAAGTTGATCAGAATAAGCG-3′ |
55 |
645 |
speJ[15] |
5′-ATCTTATTTAGTCCAAAGGTAAAT-3′ |
5′-GTGAACGAGGAGAGGTATGAA-3′ |
55.5 |
718 |
smeZ[15] |
5′-TTGGATTAGAAGTAGATAA-3′ |
5′-TTGAATTAGGAGTCAATTTCTATATCT-3′ |
52 |
638 |
ssa[15] |
5′-AGTCAGCCTGACCCTACTCCA-3′ |
5′-TAAGGTGAACCTCTATAGCTATAG-3′ |
59.1 |
691 |
speH[6] |
5′-TTGGATCCAATTCTTATAATACAACC-3′ |
5′-CCACTTCCTGAGCGGTTACTTTCGG-3′ |
50 |
399 |
speJ[6] |
5′-CTATGGTGGAATTACACC-3′ |
5′-CATGTTTATTGCCATTGATCGC-3′ |
50 |
247 |
speK[6] |
5′-GCGGATCCGATACGTACAATACAAATG-3′ |
5′-GCGAATTCAATAGCATTCAACCA-3′ |
50 |
798 |
speL[6] |
5′-GCAGCCATATGGAAGAGACTATTCCTCTTAAGGATATATACTCTC-3′ |
5′-GGGGATCCTTAATTTTCTTTGTTTGTGAATAAATAGAC-3′ |
50 |
703 |
speM[6] |
5′-GCAGCCATATGTTTTCAGATGCTGTGTTGG-3′ |
5′-GGGGATCCTTAATTTTTAGAAAAATCTTCGTTTAAGTA-3′ |
50 |
661 |
speB[6] | 5′-GGATCCCAACCAGTTGTTAAATCTCT-3′ | 5′-AACGTTCTAAGGTTTGATGCCTACAA-3′ | 50 | 774 |
All primer sequences shown here have previously been published by Maripuu et al. or Commons et al.