Table 3.
Main characteristics of tools used as references in this work
|
Tool |
Algorithm |
# Features |
Pre-processing |
Train |
Source |
|||
|---|---|---|---|---|---|---|---|---|
| (+) | (−) | (+) | (−) | (+) | (−) | |||
| Triplet −SVM |
SVM |
32 |
noML |
BP>18 |
163 |
168 |
5.0 |
CDS |
| |
|
|
|
MFE<−15 |
|
|
|
|
| |
|
|
|
noML |
|
|
|
|
| MiPred |
RF |
34 |
noML |
BP>18 |
163 |
168 |
8.2 |
CDS |
| |
|
|
|
MFE<−15 |
|
|
|
|
| |
|
|
|
50<len<138 |
|
|
|
|
| |
|
|
|
noML |
|
|
|
|
| MicroPred |
SVM |
21 |
RR |
len<151 |
Not |
Not |
12 |
CDS |
| |
|
|
|
RR |
Given |
Given |
|
ncRNAs |
| |
|
|
|
|
Clearly |
Clearly |
|
|
| G 2DE |
G 2DE |
7 |
RR |
BP>18 |
460 |
460 |
12.0 |
CDS |
| |
|
|
noML |
MFE<−25 |
|
|
|
|
| |
|
|
|
noML |
|
|
|
|
| Mirident |
SVM |
1300 |
|
BP>18 |
484 |
484 |
11.0 |
CDS |
| |
|
|
RR |
MFE<−25 |
|
|
|
|
| |
|
|
noML |
50<len<138 |
|
|
|
|
| |
|
|
|
RR |
|
|
|
|
| |
|
|
|
noML |
|
|
|
|
| HuntMi |
RF |
28 |
ExpVal |
E−value≤102 |
Not |
Not |
17.0 |
CDS |
| |
|
|
|
|
Given |
Given |
|
mRNA |
| Clearly | Clearly | ncRNA | ||||||
BP = Number of base pairs on the stem, MFE = Minimum Free Energy of the secondary structure, noML = no Multiple Loops, RR = Removed Redundancies, E-value ≤ 102 = expected value in BLASTN against mirbase, ExpVal = Only experimentally validated precursors and RF = Random forest.