Table 1.
The most abundant transcripts in fruit (Cluster A) and AZ (Cluster B) at the last stage of olive ripening
| Unigene ID | UniProt ID | Fruit | AZ | p-value | Description |
|---|---|---|---|---|---|
| Cluster A | |||||
| Cluster A1 | Enriched in fruit | ||||
| OL006944 | Q2TUW1 | 20742.30 | 1196.08 | 0.00E + 00 | Abscisic stress ripening-like protein = Glycine max |
| OL007219 | Q8GVD0 | 5033.88 | 214.76 | 0.00E + 00 | Beta-glucosidase, Bglc = Olea europaea subsp. europaea |
| OL001156 | B9H1F2 | 5022.65 | 95.79 | 0.00E + 00 | Uncharacterized protein = Populus trichocarpa |
| OL006467 | E0CU96 | 2920.45 | 169.91 | 0.00E + 00 | Uncharacterized protein = Vitis vinifera |
| OL001418 | B9R8J3 | 8902.90 | 1040.58 | 0.00E + 00 | Phosphoprotein ECPP44 = Ricinus communis |
| OL007236 | Q8H159 | 4247.26 | 1430.34 | 0.00E + 00 | Polyubiquitin 10 [Cleaved into: Ubiquitin], UBQ10, At4g05320 |
| OL003644 | C6KMJ4 | 4794.95 | 1423.76 | 0.00E + 00 | ACC oxidase, ACO1 = Boea hygrometrica |
| OL006886 | Q0WLP3 | 5085.83 | 870.26 | 0.00E + 00 | Uncharacterized protein = Arabidopsis thaliana |
| OL006727 | P29512 | 1812.59 | 180.74 | 0.00E + 00 | Tubulin beta-2/beta-3 chain, TUBB2 TUB2, At5g62690; TUBB3 TUB3, At5g62700 |
| OL006856 | Q06R56 | 1174.95 | 18.56 | 0.00E + 00 | Acetyl-CoA carboxylase beta subunit accD, FEC0159 = Forsythia europaea |
| OL006553 | O04111 | 1437.34 | 5.97 | 0.00E + 00 | Chalcone synthase, CHS, Perilla frutescens |
| OL002387 | B9S382 | 949.24 | 22.02 | 0.00E + 00 | Tubulin beta chain = Ricinus communis |
| OL000027 | A2IBF9 | 1329.71 | 22.64 | 0.00E + 00 | Flavanone-3-hydroxylase = Gossypium hirsutum |
| OL002907 | B9SLE5 | 3731.27 | 15.50 | 0.00E + 00 | Peptidase = Ricinus communis |
| OL000014 | A1E4D3 | 610.81 | 13.51 | 0.00E + 00 | Ethylene receptor, ETR1 = Coffea canephora |
| OL003708 | D5LY28 | 609.68 | 3.53 | 0.00E + 00 | Soluble acid invertase 1, SAI1 = Orobanche ramosa |
| OL001944 | B9RP00 | 1995.12 | 42.28 | 9.70E-301 | Uncharacterized protein = Ricinus communis |
| OL007516 | Q9LLB7 | 4587.02 | 1203.54 | 5.39E-270 | Thaumatin-like protein = Vitis vinifera |
| OL001075 | B7U8J4 | 1418.63 | 52.49 | 1.22E-244 | Expansin, CDK3 = Diospyros kaki |
| OL005738 | D7U0E8 | 538.58 | 14.77 | 2.73E-233 | Uncharacterized protein = Vitis vinifera |
| OL007398 | Q9AXU0 | 1854.70 | 19.23 | 5.46E-226 | Major latex-like protein = Prunus persica |
| OL000584 | A5BN70 | 585.33 | 8.71 | 2.72E-204 | Uncharacterized protein = Vitis vinifera |
| OL006621 | O49877 | 1057.22 | 162.37 | 2.53E-201 | CYP1 (Cysteine protease TDI-65) |
| OL004008 | D7SNI5 | 615.01 | 5.64 | 2.08E-200 | Uncharacterized protein = Vitis vinifera |
| OL007235 | Q8H145 | 432.58 | 14.77 | 5.11E-200 | Putative elongation factor (Fragment), At1g56075 |
| Cluster A2 | Fruit genes | ||||
| OL003887 | D7SKG3 | 9684.90 | 0.00 | 0.00E + 00 | Uncharacterized protein = Vitis vinifera |
| OL004525 | D7T2N4 | 5878.45 | 0.00 | 0.00E + 00 | 6,7-dimethyl-8-ribityllumazine synthase = Vitis vinifera |
| OL000028 | A2ICC9 | 2823.47 | 0.00 | 0.00E + 00 | Anthocyanidin synthase, ANS = Vitis vinifera |
| OL006333 | E0CQN9 | 1291.93 | 0.00 | 0.00E + 00 | Uncharacterized protein = Vitis vinifera |
| OL002413 | B9S4E4 | 2111.11 | 0.00 | 0.00E + 00 | Alpha-expansin 8 = Ricinus communis |
| OL004078 | D7SQ46 | 928.57 | 0.00 | 0.00E + 00 | Uncharacterized protein = Vitis vinifera |
| OL002282 | B9S053 | 1262.49 | 0.00 | 0.00E + 00 | ATP synthase alpha subunit mitochondrial = Ricinus communis |
| OL003892 | D7SKJ8 | 1091.87 | 0.00 | 0.00E + 00 | Uncharacterized protein = Vitis vinifera |
| OL004267 | D7SVD2 | 1810.56 | 0.00 | 5.65E-279 | Uncharacterized protein = Vitis vinifera |
| OL006945 | Q2UYU6 | 619.52 | 0.00 | 3.12E-265 | Flavonoid-3′-hydroxylase = Vitis vinifera |
| OL003801 | D7SI22 | 693.27 | 0.00 | 7.63E-263 | Uncharacterized protein = Vitis vinifera |
| OL005180 | D7TJ49 | 903.07 | 0.00 | 2.23E-255 | Uncharacterized protein = Vitis vinifera |
| OL007481 | Q9FXL4 | 642.40 | 0.00 | 8.53E-252 | Elicitor inducible beta-1,3-glucanase, NtEIG-E76 = Nicotiana tabacum |
| OL004529 | D7T2X5 | 1244.84 | 0.00 | 2.22E-235 | Uncharacterized protein = Vitis vinifera |
| OL004452 | D7T0N0 | 444.07 | 0.00 | 1.16E-219 | Uncharacterized protein = Vitis vinifera |
| OL001743 | B9RI89 | 699.45 | 0.00 | 1.76E-215 | Serine-threonine protein kinase = Ricinus communis |
| OL007506 | Q9LIC2 | 398.86 | 0.00 | 3.50E-215 | Multispanning membrane protein-like, At3g13772 |
| OL005327 | D7TN33 | 2085.55 | 0.00 | 7.29E-198 | Uncharacterized protein = Vitis vinifera |
| OL004599 | D7T4I1 | 790.51 | 0.00 | 5.34E-191 | Uncharacterized protein = Vitis vinifera |
| OL007004 | Q40168 | 880.38 | 0.00 | 1.21E-182 | Floral homeotic protein AGAMOUS, TAG1 = Solanum lycopersicum |
| OL001261 | B9I6M7 | 505.91 | 0.00 | 2.94E-181 | Uncharacterized protein = Populus trichocarpa |
| OL007205 | Q84V57 | 368.45 | 0.00 | 1.16E-180 | Pectinesterase = Nicotiana benthamiana |
| OL006690 | P14721 | 454.41 | 0.00 | 4.27E-171 | Dihydroflavonol-4-reductase, DFRA = Antirrhinum majus |
| OL006603 | O24329 | 532.05 | 0.00 | 2.50E-163 | Putative uncharacterized protein = Ricinus communis |
| OL007050 | Q45QI7 | 831.88 | 0.00 | 3.09E-161 | Chalcone-flavonone isomerase, CHI = Camellia sinensis |
| Cluster B | |||||
| Cluster B1 | Enriched in AZ | ||||
| OL007063 | Q53U35 | 466.67 | 39974.19 | 0.00E + 00 | Similar to pathogenesis-related protein, STH-2 = Solanum lycopersicum |
| OL004910 | D7TBW7 | 92.31 | 12814.10 | 0.00E + 00 | Uncharacterized protein = Vitis vinifera |
| OL000784 | A5C4X8 | 19.48 | 1499.53 | 0.00E + 00 | Uncharacterized protein = Vitis vinifera |
| OL005534 | D7TTS3 | 9.40 | 677.78 | 7.69E-234 | Uncharacterized protein = Vitis vinifera |
| OL001130 | B9GQM0 | 24.67 | 528.28 | 1.89E-222 | Glycosyltransferase, CAZy family GT8 = Populus trichocarpa |
| OL001048 | B3Y023 | 6.44 | 337.01 | 1.24E-210 | Arginine decarboxylase, PpADC, Prunus persica |
| OL001934 | B9RNU7 | 144.97 | 1060.02 | 1.01E-205 | Protein phosphatase 2c = Ricinus communis |
| OL007508 | Q9LJU7 | 141.11 | 842.87 | 6.39E-178 | Purple acid phosphatase 18, PAP18 PAP30, At3g20500 |
| OL000621 | A5BSF5 | 14.55 | 385.83 | 8.80E-161 | Uncharacterized protein = Vitis vinifera |
| OL004617 | D7T4X3 | 86.61 | 712.16 | 3.01E-154 | Uncharacterized protein = Vitis vinifera |
| OL000020 | A1X877 | 6.01 | 209.08 | 1.26E-152 | NRC1 = Solanum lycopersicum |
| OL002350 | B9S255 | 11.95 | 656.04 | 2.81E-144 | Uncharacterized protein = Ricinus communis |
| OL002844 | B9SJN1 | 4.75 | 235.99 | 1.57E-143 | Transcription factor hy5 = Ricinus communis |
| OL000814 | A5C762 | 3.65 | 376.25 | 2.47E-126 | Uncharacterized protein = Vitis vinifera |
| OL003935 | D7SLN3 | 4.44 | 211.35 | 3.03E-122 | Uncharacterized protein = Vitis vinifera |
| OL003232 | B9SWQ3 | 15.25 | 265.80 | 2.37E-119 | Serine/threonine protein kinase = Ricinus communis |
| OL000971 | A9PCV7 | 6.58 | 498.02 | 7,68E-114 | Uncharacterized protein = Populus trichocarpa |
| OL004147 | D7SS09 | 8.28 | 365.56 | 8,33E-113 | Uncharacterized protein = Vitis vinifera |
| OL003339 | B9T0K9 | 6.41 | 353.47 | 1.06E-112 | Plasminogen activator inhibitor 1 RNA-binding protein, putative = Ricinus communis |
| OL007507 | Q9LJI5 | 50.33 | 494.78 | 6.20E-107 | V-type proton ATPase subunit d1, VHA-D1, At3g28710 |
| OL000585 | A5BN72 | 2.24 | 113.57 | 6.46E-103 | Uncharacterized protein = Vitis vinifera |
| OL001014 | B1PK08 | 114.23 | 616.10 | 3.23E-100 | Putative polygalacturonase = Olea europaea |
| OL007154 | Q6RYA0 | 51.28 | 584.61 | 1,32E-98 | Salicylic acid-binding protein 2 = Nicotiana tabacum |
| OL003709 | D5M8I6 | 22.52 | 216.21 | 3.46E-98 | Uncharacterized protein = Vitis vinifera |
| OL000614 | A5BR22 | 108.46 | 1156.08 | 1.18E-92 | Uncharacterized protein = Vitis vinifera |
| Cluster B2 | AZ genes | ||||
| OL007111 | Q68V46 | 0.00 | 1349.85 | 0.00E + 00 | Beta-1,3-glucanase, glu-4 = Olea europaea |
| OL001027 | B2M153 | 0.00 | 517.74 | 4.51E-277 | Putative laccase = Rosa hybrid cultivar |
| OL002714 | B9SF95 | 0.00 | 614.34 | 7.75E-267 | Nitrate transporter = Ricinus communis |
| OL006675 | O98664 | 0.00 | 576.60 | 5.46E-253 | Ribulose bisphosphate carboxylase large chain, rbcL = Kigelia africana |
| OL007711 | Q9XEL8 | 0.00 | 396.80 | 8.65E-224 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2, HMGR2 = Capsicum annuum |
| OL000602 | A5BPW9 | 0.00 | 602.46 | 2.97E-213 | Uncharacterized protein = Vitis vinifera |
| OL001338 | B9NAX4 | 0.00 | 3264.55 | 3.51E-192 | Uncharacterized protein = Populus trichocarpa |
| OL000148 | A5AN11 | 0.00 | 396.34 | 1.06E-168 | Uncharacterized protein = Vitis vinifera |
| OL004086 | D7SQA7 | 0.00 | 273.23 | 1.06E-168 | Uncharacterized protein = Vitis vinifera |
| OL003142 | B9STR3 | 0.00 | 277.60 | 5.43E-166 | Endosomal P24A protein = Ricinus communis |
| OL002860 | B9SK95 | 0.00 | 489.81 | 8.68E-165 | 12-oxophytodienoate reductase opr = Ricinus communis |
| OL005126 | D7THY5 | 0.00 | 222.22 | 1.74E-164 | Uncharacterized protein = Vitis vinifera |
| OL007151 | Q6RH27 | 0.00 | 570.32 | 1.42E-160 | NAC domain protein, SlNAC1 = Solanum lycopersicum |
| OL004686 | D7T6Y2 | 0.00 | 305.72 | 6.41E-145 | Uncharacterized protein = Vitis vinifera |
| OL007397 | Q9AXR6 | 0.00 | 248.90 | 1.31E-141 | ATP:citrate lyase = Capsicum annuum |
| OL000367 | A5B7F7 | 0.00 | 319.83 | 2.10E-140 | Uncharacterized protein = Vitis vinifera |
| OL002951 | B9SML0 | 0.00 | 214.99 | 6.88E-136 | Lyase = Ricinus communis |
| OL007180 | Q7XE16 | 0.00 | 176.98 | 8.81E-134 | Cell division cycle protein 48 = Oryza sativa subsp. japonica |
| OL005047 | D7TFE6 | 0.00 | 357.56 | 1.76E-133 | Uncharacterized protein = Vitis vinifera |
| OL000444 | A5BDC8 | 0.00 | 382.41 | 5.77E-129 | Uncharacterized protein = Vitis vinifera |
| OL002899 | B9SL31 | 0.00 | 245.52 | 2.31E-128 | Transcription factor = Ricinus communis |
| OL003084 | B9SRT5 | 0.00 | 96.17 | 1.89E-124 | Phospholipid-transporting atpase = Ricinus communis |
| OL007255 | Q8LAH7 | 0.00 | 341.40 | 4.96E-119 | 12-oxophytodienoate reductase 1, AtOPR1, At1g76680 |
| OL001800 | B9RJM7 | 0.00 | 394.51 | 1.27E-116 | Uncharacterized protein = Ricinus communis |
| OL002929 | B9SM03 | 0.00 | 296.74 | 2.54E-116 | Uncharacterized protein = Ricinus communis |
The sequences were selected at p < 0.01 and were sorted by p-value. The table shows the total read count in RPKMx1000 for each gene after normalization across the 2 samples: (a) Fruit at 217 DPA, (b) AZ at 217 DPA.