Table 2.
List of olive transcripts from KEGG pathway maps with EC numbers, Unigene ID numbers, UniProt ID numbers, normalized expression values and annotated gene description
| KEGG PATHWAY | EC | Unigene ID | UniProt ID | Fruit | AZ | p-value | Description |
|---|---|---|---|---|---|---|---|
| STARCH AND SUCROSE METABOLISM | |||||||
| Cluster A | |||||||
| Cluster A1 | Enriched in fruit | ||||||
| 3.2.1.26 | OL003708 | D5LY28 | 610 | 4 | 0.00E + 00 | Beta-fructofuranosidase | |
| 2.4.1.13 | OL000884 | A7IZK5 | 244 | 85 | 1.61E-36 | Sucrose synthase | |
| 3.2.1.39 | OL002642 | B9SCU1 | 111 | 94 | 5.10E-22 | Glucan endo-1,3-beta-D-glucosidase | |
| Cluster A2 | Fruit genes | ||||||
| 2.4.1.1 | OL002542 | B9S939 | 250 | 0 | 3.20E-96 | 1,4-alpha-glucan phosphorylase | |
| 2.4.1.12 | OL002104 | B9RUD8 | 5 | 0 | 3.91E-03 | Cellulose synthase | |
| 2.7.7.27 | OL000035 | A3KCF8 | 10 | 0 | 6.10E-05 | Glucose-1-phosphate adenylyltransferase | |
| 2.7.7.9 | OL002654 | B9SD97 | 5 | 0 | 1.95E-03 | UDP glucose pyrophosphorylase | |
| 3.1.1.11 | OL001166 | B9H3W4 | 10 | 0 | 3.91E-03 | Pectin methylesterase | |
| 5.1.3.6 | OL007529 | Q9LPC1 | 8 | 0 | 9.77E-04 | UDP-glucuronate 4-epimerase | |
| 5.3.1.9 | OL003650 | C6TGC6 | 6 | 0 | 1.95E-03 | Glucose-6-phosphate isomerase | |
| Cluster B | |||||||
| Cluster B1 | Enriched in AZ | ||||||
| 3.2.1.2 | OL006254 | E0AE02 | 18 | 32 | 1.82E-03 | Beta-amylase | |
| 4.1.1.35 | OL001047 | B3VDY9 | 102 | 168 | 2.19E-06 | UDP-glucuronate decarboxylase | |
| 2.4.1.21 | OL001761 | B9RIR1 | 5 | 28 | 3.24E-08 | ADP-glucose synthase | |
| Cluster B2 | AZ genes | ||||||
| 3.2.1.4 | OL007034 | Q43149 | 0 | 20 | 9.31E-10 | Cellulase | |
| 2.7.1.4 | OL006635 | O65583 | 0 | 9 | 2.44E-04 | Fructokinase | |
| 3.1.3.12 | OL002988 | B9SNT9 | 0 | 4 | 1.95E-03 | Trehalose 6-phosphate phosphatase | |
| 3.2.1.1 | OL007022 | Q42678 | 0 | 17 | 2.38E-07 | Alpha-amylase | |
| 3.2.1.15 | OL000895 | A7PZL3 | 0 | 10 | 3.05E-05 | Polygalacturonase | |
| 3.2.1.20 | OL007491 | Q9LEC9 | 0 | 12 | 2.91E-11 | Alpha-glucosidase | |
| CYSTEINE AND METHIONINE METABOLISM | |||||||
| Cluster A | |||||||
| Cluster A1 | Enriched in fruit | ||||||
| 2.6.1.1 | OL001190 | B9HAW0 | 35 | 8 | 3.18E-06 | Aspartate transaminase | |
| 2.7.1.100 | OL002217 | B9RY82 | 64 | 24 | 1.36E-05 | S-methyl-5-thioribose kinase | |
| Cluster A2 | Fruit genes | ||||||
| 2.1.1.14 | OL002466 | B9S6C1 | 81 | 0 | 1.29E-26 | 5methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase | |
| 2.1.1.37 | OL001007 | B0FPD7 | 6 | 0 | 1.95E-03 | DNA (cytosine-5-)-methyltransferase | |
| 2.5.1.47 | OL002734 | B9SFU8 | 52 | 0 | 4.34E-19 | Cysteine synthase | |
| 2.5.1.6 | OL007215 | Q8GTL5 | 10 | 0 | 2.44E-04 | Methionine adenosyltransferase | |
| Cluster B | |||||||
| Cluster B1 | Enriched in AZ | ||||||
| 2.5.1.48 | OL002235 | B9RYU1 | 3 | 23 | 1.94E-06 | Cystathionine gamma-synthase | |
| 2.8.1.2 | OL001730 | B9RHZ9 | 7 | 57 | 2.12E-13 | 3-mercaptopyruvate sulfurtransferase | |
| 3.1.3.77 | OL006405 | E0CSI1 | 5 | 17 | 5.08E-04 | Acireductone synthase | |
| 3.3.1.1 | OL006738 | P35007 | 239 | 308 | 2.02E-06 | Adenosylhomocysteinase | |
| 5.3.1.23 | OL002002 | B9RR88 | 12 | 74 | 7.52E-15 | S-methyl-5-thioribose-1-phosphate isomerase | |
| Cluster B2 | AZ genes | ||||||
| 1.1.1.27 | OL007383 | Q96569 | 0 | 191 | 9.54E-07 | L-lactate dehydrogenase | |
| 1.14.17.4 | OL006733 | P31237 | 0 | 67 | 1.36E-20 | ACC oxidase | |
| 2.3.1.30 | OL006733 | B9S9Q4 | 0 | 27 | 1.16E-10 | Serine O-acetyltransferase | |
| 2.5.1.16 | OL003685 | D2K8S6 | 0 | 52 | 5.55E-17 | Spermidine synthase | |
| 4.1.1.50 | OL000082 | A5AFT0 | 0 | 133 | 2.80E-45 | Adenosylmethionine decarboxylase | |
| 2.7.2.4 | OL005688 | D7TYU1 | 0 | 5 | 7.81E-03 | Aspartate kinase | |
| AMINO SUGAR AND NUCLEOTIDE SUGAR METABOLISM | |||||||
| Cluster A | |||||||
| Cluster A1 | Enriched in fruit | ||||||
| 5.3.1.8 | OL001163 | B9H303 | 77 | 5 | 1.21E-21 | Mannose-6-phosphate isomerase | |
| 5.3.1.9 | OL001141 | B9GV29 | 16 | 4 | 7.53E-04 | Glucose-6-phosphate isomerase | |
| Cluster A2 | Fruit genes | ||||||
| 1.1.1.271 | OL002645 | B9SCY0 | 17 | 0 | 3.05E-05 | GDP-L-fucose synthase | |
| 2.7.1.4 | OL004560 | D7T3P0 | 12 | 0 | 6.10E-05 | Fructokinase | |
| 2.7.7.27 | OL001390 | B9R7X6 | 7 | 0 | 9.77E-04 | Glucose-1-phosphate adenylyltransferase | |
| 2.7.7.64 | OL007403 | Q9C5I1 | 11 | 0 | 1.91E-06 | UTP-monosaccharide-1-phosphate uridylyltransferase | |
| 2.7.7.9 | OL002654 | B9SD97 | 5 | 0 | 1.95E-03 | UTP-glucose-1-phosphate uridylyltransferase | |
| 5.1.3.6 | OL007529 | Q9LPC1 | 8 | 0 | 9.77E-04 | UDP-glucuronate 4-epimerase | |
| Cluster B | |||||||
| Cluster B1 | Enriched in AZ | ||||||
| 3.2.1.14 | OL007471 | Q9FS45 | 10 | 134 | 5.46E-30 | Chitinase | |
| 4.1.1.35 | OL001047 | B3VDY9 | 102 | 168 | 2.19E-06 | UDP-glucuronate decarboxylase | |
| Cluster B2 | AZ genes | ||||||
| 3.2.1.55 | OL002630 | B9SCF3 | 0 | 6 | 2.44E-04 | Alpha-N-arabinofuranosidase | |
| 5.1.3.12 | OL002629 | B9SQF3 | 0 | 6 | 3.91E-03 | UDP-glucuronate 5”-epimerase | |
| 5.4.2.8 | OL003424 | B9T3D2 | 0 | 5 | 9.77E-04 | Phosphomannomutase | |
The table shows the total read count in RPKMx1000 for each gene after normalization across the 2 samples: (a) Fruit at 217 DPA, (b) AZ at 217 DPA. We selected the sequences at p < 0.01.