Table 3.
Genes related to cellulose and lignin biosynthesis differentially transcribed in compression (CW) and opposite wood (OW) formed in branches
| Xylem tissues | Differentially transcribed genes* | Representing ESTs | GenBank accession | Log-2 ratios | P-values |
|---|---|---|---|---|---|
| CW-spring | PrCesA3 | TWL7C2 | FE524088 | 1.316 | 0.045 |
| CW-autumn | PrCesA3 | TWL1D5 | FE524207 | 1.984 | 0.046 |
| CW-autumn | PrCesA7 | JWE3D1 | FE518578 | 1.464 | 0.041 |
| CW-spring | PrCesA11 | TWL21B5 | FE523881 | 1.336 | 0.041 |
| CW-autumn | PrCesA11 | TWL28A3 | FE523830 | 1.867 | 0.038 |
| CW-spring | PrCesA-like | JWLvB12 | FE520241 | 1.661 | 0.016 |
| CW-autumn | PrCesA-like | JWLvB12 | FE520241 | 1.417 | 0.012 |
| CW-spring | Sucrose synthase | TWL8B9 | FE524247 | 1.467 | 0.038 |
| CW-autumn | Sucrose synthase | JWEtG3 | FE519171 | 2.153 | 0.045 |
| CW-spring | Sucrose synthase 1 | JWE5H8 | FE519487 | 1.377 | 0.033 |
| CW-spring | Callose synthase-like | TWL14D7 | FE524183 | 0.933 | 0.028 |
| CW-spring | Glycosyl transferase 48 | JWLxB9 | FE521086 | 1.444 | 0.037 |
| CW-spring | Chorismate synthase | TWL12H4 | FE524274 | 2.155 | 0.046 |
| CW-autumn | Chorismate synthase | TWL12H4 | FE524274 | 1.336 | 0.177 |
| CW-spring | Chorismate mutase | MWE4C8 | FE521447 | 1.308 | 0.010 |
| CW-spring | Shikimate kinase 2 | JWL17G12 | FE520492 | 2.685 | 0.046 |
| CW-spring | EPSPS | JWLbD8 | FE519700 | 2.111 | 0.018 |
| CW-autumn | EPSPS | JWLbD8 | FE519700 | 1.906 | 0.040 |
| CW-spring | DAHPS | MWE11H6 | FE521953 | 1.295 | 0.048 |
| CW-autumn | DAHPS | MWE11H6 | FE521953 | 1.966 | 0.041 |
| CW-spring | 4CL | JWE8F8 | FE519348 | 1.289 | 0.046 |
| CW-autumn | 4CL | JWEnE8 | FE519597 | 1.830 | 0.046 |
| CW-spring | C4H | TWL23G12 | FE523933 | 1.547 | 0.047 |
| CW-autumn | C4H | MWE8E8 | FE522027 | 1.921 | 0.048 |
| CW-spring | CCR-like | JWE3H12 | FE518650 | 1.180 | 0.043 |
| CW-spring | COMT | MWL29C12 | FE522592 | 1.449 | 0.049 |
| CW-autumn | COMT | MWE7C3 | FE522592 | 1.571 | 0.014 |
| CW-autumn | PAL2 | JWL4F3 | FE521295 | 1.635 | 0.050 |
| CW-spring | Laccase 2 | JWL22G2 | FE520504 | 1.810 | 0.049 |
| CW-autumn | Laccase 2 | JWL22G2 | FE520504 | 1.238 | 0.039 |
| CW-spring | Laccase 4 | TWL13F12 | FE524173 | 1.616 | 0.070 |
| CW-autumn | Methionine synthase | JWLuE3 | FE520972 | 1.558 | 0.031 |
| CW-autumn | Methionine synthase 2 | JWEuE1 | FE519234 | 1.663 | 0.049 |
| CW-autumn | MetE | MWE9E1 | GO269413 | 1.749 | 0.045 |
| CW-spring | SAMS | TWL18G9 | FE523865 | 1.552 | 0.044 |
| CW-autumn | SAMDC | JWE8E2 | FE519501 | 1.881 | 0.048 |
| CW-spring | Dirigent-like protein pDIR3 | JWLf10D9 | FE519781 | 1.493 | 0.035 |
| CW-autumn | Dirigent-like protein pDIR3 | TWL26F6 | FE524371 | 1.226 | 0.043 |
| CW-autumn | Dirigent-like protein pDIR4 | JWLwD4 | FE520269 | 1.807 | 0.042 |
| CW-autumn | Dirigent-like protein pDIR14 | JWEdE1 | FE518247 | 2.298 | 0.042 |
| OW-autumn | PrCesA10 | TWE21G7 | FE523538 | -2.497 | 0.041 |
| OW-autumn | Glycosyl transferase 8-like | TWE16F7 | FE523341 | -1.532 | 0.048 |
| OW-autumn | Glycosyl transferase NTGT5a | TWE13G1 | FE523678 | -1.638 | 0.047 |
| OW-spring | COMT-like | JWLkA8 | FE520785 | -2.112 | 0.035 |
| OW-spring | Peroxidase precursor | TWE24D10 | FE523740 | -1.376 | 0.030 |
| OW-autumn | Peroxidase precursor | TWE27F5 | FE523746 | -1.774 | 0.032 |
| OW-spring | Peroxidase PSYP1,Class III | MWL21F8 | GO269502 | -1.999 | 0.039 |
| OW-autumn | Peroxidase PSYP1,Class III | MWL21F8 | GO269502 | -1.474 | 0.045 |
| OW-autumn | Dirigent protein pDIR18 | TWE21H12 | FE523546 | -0.636 | 0.021 |
*PrCesA, Pinus radiata cellulose synthase; 4CL, 4-coumarate:CoA ligase; C4H, cinnamic acid 4-hydroxylase; CCR, cinnamoyl CoA reductase; COMT, caffeic acid ortho-methyltransferase; PAL, phenylalanine ammonia-lyase; DAHPS, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; EPSPS, 5-enolpyruvylshikimate 3-phosphate synthase; SAMS, S-adenosylmethionine synthetase; SAMDC, S-adenosylmethionine decarboxylase; MetE, cobalamin-independent methionine synthase.