Table 3.
A summary of selected Foc-responsive genes
| Gene ID | Foc1 | Foc TR4 | Foc1 | Foc TR4 | Foc1 | Foc TR4 | Gene annotation |
|---|---|---|---|---|---|---|---|
| 3 hrs | 27 hrs | 51 hrs | |||||
| Pathogenesis-related and other known defense-related genes | |||||||
| 7G16510* | 8.2 | 5.2 | 12.7 | 29.6 | 16.5 | 20.9 | Pathogenesis-related protein, thaumatin-like protein |
| 6G31470 | 4.3 | 2.6 | 70.1 | >100 | 41.0 | 46.6 | Thaumatin-like protein |
| 1G02580 | 0.6 | 0.2 | 10.2 | 4.7 | 10.2 | 15.0 | Thaumatin-like protein |
| 6G21330 | 1.1 | 0.7 | 5.4 | 11.4 | 10.7 | 25.1 | Endochitinase |
| CUFF.40341.1* | 6.3 | 2.1 | 2.3 | 3.9 | 6.8 | 65.9 | Acidic endochitinase |
| CUFF.18858.1 | 4.8 | 0.1 | 0.2 | 0.7 | 0.2 | 0.3 | Non-specific lipid-transfer protein 2-like |
| 5G10940 | 0.6 | 0.3 | 0.1 | 0.0 | 0.0 | 0.1 | Trypsin inhibitor |
| 11G16380 | 1.6 | 0.9 | >100 | >100 | 45.5 | 40.6 | Phenylalanine ammonia-lyase 3 (PAL3) |
| 9G30640 | 3.6 | 1.4 | 89.8 | >100 | 9.2 | 18.7 | Germin family protein 12 |
| randomG28090 | 0.9 | 0.3 | 8.8 | 10.5 | 4.5 | 23.8 | Germin family protein 3 |
| 10G01250 | 7.5 | 4.5 | 27.8 | >100 | 37.0 | 40.9 | Lichenase (endo-(1-- > 4)-beta-glucanase) |
| 9G23850 | 0.79 | 0.92 | >100 | >100 | >100 | >100 | Lignin-forming anionic peroxidase |
| CUFF.1900 | 0.8 | 0.3 | 8.4 | 13.4 | 10.0 | 12.6 | bon1-associated protein 2 (BAP2)-like |
| 5G08810 | 1.0 | 0.2 | 0.1 | 0.2 | 0.1 | 0.4 | Allene oxide synthase 2 (CYP74A2) |
| Ethylene biosynthesis and signaling | |||||||
| randomG26960* | 2.7 | 1.4 | 65.0 | 38.4 | >100 | >100 | 1-aminocyclopropane-1-carboxylate oxidase |
| randomG20430* | 2 | 0.4 | >100 | >100 | >100 | >100 | 1-aminocyclopropane-1-carboxylate oxidase |
| 5G09690 | 1.7 | 1.2 | 3.7 | 30.7 | 7.6 | 2.8 | 1-aminocyclopropane-1-carboxylate oxidase |
| 2G07300 | 0.5 | 0.7 | 1.6 | 9.5 | 19.1 | 3.8 | Putative Ethylene-responsive transcription factor 1 (ERF1) |
| 4G05520 | 0.5 | 0.6 | 19.6 | 50.9 | >100 | >100 | ERF1B |
| randomG27100 | 0.5 | 0.4 | 16.3 | 66.3 | >100 | 83.0 | ERF071 |
| randomG16100 | 1.3 | 1.2 | 10.3 | 21.4 | 24.2 | 9.9 | ERF9 |
| 11G20930 | 0.7 | 0.7 | 7.0 | 10.5 | 7.8 | 7.2 | ERF2 |
| Transcription factors | |||||||
| 2G20130 | 0.5 | 1.6 | 22.4 | 13.5 | 8.3 | 9.5 | Putative WRKY transcription factor 6 (WRKY6) |
| 4G01930* | 0.0 | 0.1 | 0.7 | 0.8 | 0.1 | 0.1 | WRKY40 |
| randomG14780 | 2.0 | 10.4 | >100 | >100 | 35.3 | 37.2 | Putative Transcription factor ICE1 |
| 5G14600 | 0.9 | 1.7 | 11.2 | 12.8 | 96.2 | 12.7 | Putative Myb-related protein Myb4 |
| 5G01960 | 0.98 | 3.71 | >100 | >100 | >100 | >100 | Homeotic protein knotted-1 |
| CUFF.15326.1* | 0.4 | 0.6 | >100 | >100 | 6.6 | 11.9 | Sigma factor binding protein (SIB)1 |
| Kinases | |||||||
| 9G19130 | 0.4 | 0.4 | 0.0 | 0.4 | 0.1 | 0.0 | Mitogen-activated protein kinase kinase kinase ANP1 |
| 6G07600 | 0.6 | 1.7 | 62.1 | 65.7 | 94.5 | 67.7 | STE_MEKK (mkkA) |
| 10G21160 | 0.66 | 5.02 | >100 | >100 | >100 | >100 | Mitogen-activated protein kinase kinase 2 |
| 10G07820 | 1.5 | 0.6 | >100 | >100 | 14.7 | 22.0 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase (BAK)1-like |
| 2G02850 | 2.3 | 1.1 | 1.1 | 0.9 | 7.6 | 1.3 | Putative Wall-associated receptor kinase (WAK 1) |
| 6G15260 | 0.8 | 0.8 | 2.2 | 3.0 | 5.3 | 3.8 | WAK2 |
| 4G09850 | 1.0 | 9.4 | >100 | 40.9 | 5.4 | 5.7 | WAK4 |
*Expression patterns of these genes were examined by qPCR.