Table 4.
Significantly enriched pathways of up-regulated genes by cold stress in Anthurium
| Pathway | Number of DEGs with pathway annotation (226) | Number of all genes with pathway annotation (14105) | Qvalue | Pathway ID | |
|---|---|---|---|---|---|
| 1 h vs. control | Photosynthesis | 13 (15.85%) | 61 (0.43%) | 6.40e-16 | ko00195 |
| Metabolic pathways | 45 (54.88%) | 3594 (25.48%) | 2.41e-07 | ko01100 | |
| Oxidative phosphorylation | 11 (13.41%) | 216 (1.53%) | 5.76e-07 | ko00190 | |
| RNA polymerase | 13 (15.85%) | 558 (3.96%) | 1.75e-04 | ko03020 | |
| Pyrimidine metabolism | 14 (17.07%) | 672 (4.76%) | 2.24e-04 | ko00240 | |
| Purine metabolism | 14 (17.07%) | 729 (5.17%) | 4.36e-04 | ko00230 | |
| 5 h vs. control | Metabolic pathways | 122 (36.31%) | 3594 (25.48%) | 4.77e-04 | ko01100 |
| Oxidative phosphorylation | 16 (4.76%) | 216 (1.53%) | 2.58e-04 | ko00190 | |
| mRNA surveillance pathway | 32 (9.52%) | 669 (4.74%) | 3.58e-03 | ko03015 | |
| Arginine and proline metabolism | 10 (2.98%) | 103 (0.73%) | 3.58e-03 | ko00330 | |
| RNA polymerase | 27 (8.04%) | 558 (3.96%) | 5.58e-03 | ko03020 | |
| RNA transport | 36 (10.71%) | 834 (5.91%) | 5.58e-03 | ko03013 | |
| Ascorbate and aldarate metabolism | 8 (2.38%) | 77 (0.55%) | 5.77e-03 | ko00053 | |
| Photosynthesis | 7 (2.08%) | 61 (0.43%) | 6.21e-03 | ko00195 | |
| Pyrimidine metabolism | 29 (8.63%) | 672 (4.76%) | 1.38e-02 | ko00240 | |
| Pyruvate metabolism | 11 (3.27%) | 182 (1.29%) | 3.60e-02 | ko00620 | |
| Purine metabolism | 29 (8.63%) | 729 (5.17%) | 3.65e-02 | ko00230 | |
| 24 h vs. control | mRNA surveillance pathway | 31 (13.72%) | 669 (4.74%) | 9.61e-06 | ko03015 |
| RNA transport | 31 (13.72%) | 834 (5.91%) | 1.02e-03 | ko03013 | |
| Plant-pathogen interaction | 39 (17.26%) | 1180 (8.37%) | 1.06e-03 | ko04626 |
(Pathways with Qvalue ≤ 0.05 are significantly enriched in DEGs).