Table 1.
Number of reads sequenced and mapped to the tomato genome
| c1d (control) | a1d (ABA treatment) | Sum | |
|---|---|---|---|
| Raw bases (bp) | 12,814,237,438 | 14,141,031,018 | 26,955,268,456 |
| Raw reads | 126,873,638 | 140,109,218 | 266,982,856 |
| Clean bases (bp) | 9,936,610,838 | 11,016,491,741 | 20,953,102,579 |
| Clear reads | 100455991 | 111323699 | 211779690 |
| Total alignment * (percent of clean reads) | 82394883 82.02% | 91194594 81.92% | 173589477 81.97% |
| Unique matches (percent of clean reads) | 36742770 36.58% | 40622954 36.49% | 77365724 36.53% |
| Multi-position match (percent of clean reads) | 45652113 45.44% | 50571640 45.43% | 96223753 45.44% |
| Unmatched (percent of clean reads) | 18061108 17.98% | 20129105 18.08% | 38190213 18.03% |
*The number of unique mapping reads plus multimapping reads equals the total number of total alignments.